AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso7g00343 | ATGTTGCACTTGACTGGAGACCTTCTGACCATATTTATAAAAAAAATTTCATATAAAATACTGTTACCCAAAACGGCATATTTCAAGCCTCCACCGTGCCTAGAAGTCACGCAGCCTCAGCATGCGATGGCCGCCAACGGCATGAAGATGGCGGTAACCTCTCAGGCATACCTGGAGGGATCTCAGGTCAAACAAACTAAATCACTCATCTCTGAGTTATGCCGTCTGTTTTACAACCTAGGTTGGGTCTCCGGCACCGGCGGAAGCATCACCGCGAAGGTCCACGATGATTCCATCCCCAAATCGGACCAACTCATCATCATGTCCCCTTCCGGTGTGCAAAAGGAGAGAATGGTAGAAGAAGATATGTATGTGTTATCTTCAATTGGCGATATTTTGTTTTCTCCATTGCCGAAGCCTTACCCTCACAAGCCGCCTAAATGTTCAGATTGCGCCCCTCTTTTCATGAAGGCTTATCATATGCGTAATGCTGGTGCAGTTATTCATAGTCACGGAATGGAATCTTGTCTTGTGACAATGCTTGATCCGTTGGCAAAAGAGTTTAGGATCACTCATATGGAGATGATCAAAGGAATTCAAGGGCATGGCTATTATGATGAGCTTGTGGTTCCGATAATAGAAAATACTGCTCATGAAAGAGAGTTGACTGAATCACTTGCTGCAGCGATTGAAGCCTTCCCCAAAACAACTGCGGTACTGGTGCGAAACCATGGTATATATGTATGGGGTGATTCCTGGATTAGTGCCAAAACTCAGGCCGAATGTTACCACTATCTCTTTGAAGCTGCAATCAAACTTCATCAATTAGGCCTTGACTGGTCAACTCCGAGTCATGGTCCACTTCAAAGTTCCAAACGATTTCTAGGTGGTCAAACTACAAGCACGTCTCAAAAGCGTTGCATTGTTCTTGACATCGAAGGGACAACTACACCAATATCATTTGTGACAGATGTCCTTTTCCCATATGCCAAGAAAAATGTTCAAAGGCATTTGGAAGAAACATATGATACTGATTTCACTCAAGATGATATTAAGTTGTTGCGATCTCAAGTAGAAGATGATTTACAATATGGGGTCGCCGTTCCAATTCCACCCGATGAGGCAGGAAAACAGGCGGTGATAGCTGCCTTGGTTGCTAATGTTGAAGGAATGATAAAATCTGACAGGAAAATCACTTCATTAAAACAGTTACAAGGTCACATATGGCGCACTGGATTTGAGAAAAATGAACTTAAAGGAGTTGTGTTTGATGATGTACCTGGTTCTCTTGAAAAATGGCATGCTTCCGGGATAAAGGTGTACATTTATTCAAGTGGTAGCAGATTGGCACAGAGACTGTTATTTGGATATACAGATTATGGGGATTTAAGGAACTACTTGTGTGGATTTTTTGACACCACAGTGGGGAACAAGAAAGAAACAAAAAGTTATGTTGAAATATCAGAATCACTTGGTGTTCATAAGCCATCAGAAATCTTATTTGTGACTGATGTTTATCAAGAAGCAGTTGCTGCAAAGGCAGCTGGTTTGGAGGTTATGATATCAATTCGGCCCGGAAACGGATCACTTCCTGAGAATCATGGTTTCAAGACTATCAAGTCTTTTTCGGAGATTTGA | 1638 | 42.31 | MLHLTGDLLTIFIKKISYKILLPKTAYFKPPPCLEVTQPQHAMAANGMKMAVTSQAYLEGSQVKQTKSLISELCRLFYNLGWVSGTGGSITAKVHDDSIPKSDQLIIMSPSGVQKERMVEEDMYVLSSIGDILFSPLPKPYPHKPPKCSDCAPLFMKAYHMRNAGAVIHSHGMESCLVTMLDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAHERELTESLAAAIEAFPKTTAVLVRNHGIYVWGDSWISAKTQAECYHYLFEAAIKLHQLGLDWSTPSHGPLQSSKRFLGGQTTSTSQKRCIVLDIEGTTTPISFVTDVLFPYAKKNVQRHLEETYDTDFTQDDIKLLRSQVEDDLQYGVAVPIPPDEAGKQAVIAALVANVEGMIKSDRKITSLKQLQGHIWRTGFEKNELKGVVFDDVPGSLEKWHASGIKVYIYSSGSRLAQRLLFGYTDYGDLRNYLCGFFDTTVGNKKETKSYVEISESLGVHKPSEILFVTDVYQEAVAAKAAGLEVMISIRPGNGSLPENHGFKTIKSFSEI | 545 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso7g00343 | 545 | SUPERFAMILY | AraD-HMP-PK domain-like | 64 | 285 | IPR036409 | - | |
| Smso7g00343 | 545 | Gene3D | - | 62 | 287 | IPR036409 | - | |
| Smso7g00343 | 545 | FunFam | Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 | 319 | 413 | - | - | |
| Smso7g00343 | 545 | Pfam | Class II Aldolase and Adducin N-terminal domain | 70 | 270 | IPR001303 | - | |
| Smso7g00343 | 545 | Hamap | Methylthioribulose-1-phosphate dehydratase [APIP]. | 55 | 279 | IPR027514 | GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro) | |
| Smso7g00343 | 545 | Gene3D | - | 319 | 412 | - | - | |
| Smso7g00343 | 545 | Pfam | haloacid dehalogenase-like hydrolase | 306 | 516 | - | - | |
| Smso7g00343 | 545 | FunFam | Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 | 413 | 545 | - | - | |
| Smso7g00343 | 545 | SFLD | enolase-phosphatase | 306 | 544 | IPR023943 | GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro) | |
| Smso7g00343 | 545 | PANTHER | ENOLASE-PHOSPHATASE E1 | 300 | 545 | - | GO:0019509(PANTHER)|GO:0043874(PANTHER) | |
| Smso7g00343 | 545 | NCBIfam | acireductone synthase | 306 | 544 | IPR023943 | GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro) | |
| Smso7g00343 | 545 | Gene3D | - | 413 | 545 | IPR023214 | - | |
| Smso7g00343 | 545 | SMART | Aldolase-II-2 | 68 | 271 | IPR001303 | - | |
| Smso7g00343 | 545 | SFLD | Haloacid Dehalogenase | 306 | 544 | - | - | |
| Smso7g00343 | 545 | SUPERFAMILY | HAD-like | 302 | 545 | IPR036412 | - | |
| Smso7g00343 | 545 | Hamap | Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. | 55 | 545 | IPR027505 | - | |
| Smso7g00343 | 545 | NCBIfam | methylthioribulose 1-phosphate dehydratase | 70 | 276 | IPR017714 | GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro) | |
| Smso7g00343 | 545 | FunFam | Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 | 63 | 288 | - | - | |
| Smso7g00343 | 545 | CDD | HAD-EP | 307 | 526 | IPR023943 | GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso7g00343 | K16054 | methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] | ||||
| Smso7g00343 | K09880 | enolase-phosphatase E1 [EC:3.1.3.77] | ||||
| Smso7g00343 | K08964 | methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 148195 | Smso18g01651 | Smso7g00343 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr17:14587586 | Smso7g00343 | Smso-Chr7:5760533 | dispersed | |
| Smso | Smso-Chr19:9914862 | Smso7g00343 | Smso-Chr7:5760533 | dispersed | |
| Smso | Smso-Chr7:5760533 | Smso19g01097 | Smso-Chr19:46230486 | dispersed | |
| Smso | Smso-Chr29:680321 | Smso7g00343 | Smso-Chr7:5760533 | transposed | |
| Smso | Smso-Chr18:74561775 | Smso7g00343 | Smso-Chr7:5760533 | wgd | |
| Smso | Smso-Chr29:5862824 | Smso7g00343 | Smso-Chr7:5760533 | wgd |