AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso7g00374 | ATGGAGACTCCGGTGTCGAAAAGGTTGTTGAGGAAGAAATCCCTTTCTAGAAGCTATGATGAGAATTTGATGGATGATTATTTGGATAAACAGTTAGGTAGTTCTTCTAGGAAGAGGTTTAGAACAAAGAAGGAATTGGAGAAAGAAACTGAAAAAGAAGCCATGATAGCGCTTTCTTTAGGGTTTCCGATTGATGCACTGCTTGAAGAGGAAATTAAAGCTAATGTTGTGAGTGAGTTAGATGGGAAGCAACAGAATGATTATATTGTTGTTAGAAACCATATTCTTTCAAGGTGGAGAGCTAATGTACAAGCATGGCTTTCTAAAGGGCAGATAAAGGAAACTGTGAGTAATGAATATGGACAGTTGATACATTCGGCTTATGATTTTTGTTTGTTTAATGGGTATATCAATTTTGGCGTTTCACCGCCGTTCAAGGCTCAGATGCCCGAGGAAGCAACTGAGGGGTCTGTCATAATCATTGGTGCAGGGCTTGCTGGGTTAGCAGCTGCTCGTCAGCTGCTAGCTTTTGGTTTTAAAGTGATTGTTTTAGAAGGTAGGAACAGACCTGGTGGAAGAGTTTATACACAAAAGATGGGTGAAAAGGGTAATTATGCTGCTGTTGATCTTGGTGGTAGTGTTATTACTGGTATCCATGCAAACCCTCTTGGTGTTTTGGCTAGACAGCTTTCGATTCCTCTTCATAAGGTTAGAGATAAATGTCCGTTGTATGATCCTGAAGGCCGACCAGTTGGTGATGAAATTGATTCCAAAGTAGAATTTATTTTTAATAGGCTTTTAGACAAAGTTACTGAGTTTAGACAAATTATGGGTCAATCAGCTGCTGATATTTCTTTGGGCTCAGTTCTTGAAAAACTTAGACAGTTGTACACTGTGGCCACAGCTCCCGAGGAAAAGCAGTTACTAGATTGGCATTTTGCAAATTTAGAATACGCAAACGCGGGCTGTCTTTCACAGCTTTCTGCTGCTTATTGGGATCAAGATGATCCTTATGAAATGGGTGGCGATCATTGCTTTCTTGCTGGAGGGAATTGGAGATTAATTGAATCATTGTGTGACGGGGTTCCCATTTTCTATGAAAAAACCGTTCAAACGGTTCGATACAGTAATGAAGGCGTTGAGGTGATTTCTGGGGATCAAACATATCAAGCAGATATGGTATTATGCACCGTTCCTCTTGGTGTTTTAAAGAAACGGACAATAAAGTTCATACCTGAATTACCAGAAAGAAAGCTAGAAGCAATTGATAAACTTGGATTTGGGTTGTTGAATAAGGTTGCTATGGTCTTCCCATATGTCTTTTGGGGTGAAGATTTAGATACGTTTGGCTGCCTTAGCAGGAATAGCAATACGCGGGGTGAGTTCTTTCTGTTTTACAGTTATCATACGGTTTCTGGGGGTTCAGTACTTGTCGCATTGGTTGCTGGTGAAGCTGCAAGATCTTTTGAGTCCACACATCCTTCCACTTTACTACACCGTGTTTTAAGCATCCTTCGAGGTATATATGGTCCAAAGGGTGTTGATGTACCTAATCCCATCCAATCTGTTTGTACAAAATGGGGAAATGATCCCCTTTCTTATGGTTCATACTCACATGTAAGGGTGCACTCGTCGGGTAGTGATTATGACATACTTGCAGAAAATGTGGAAAATCGACTTTTTTTTGCTGGTGAAGCCACAAACCGCCAACATCCTGCCACCATGCATGGTGCTTATTTAAGTGGTTTAAGAGAAGCTTCATGCATTTATAGAGTCACAAGGGGTGATAGTAAACAAACTCATCCTAGAAAAAGCAATCGAAAATTCGTTGGAGTATGTGATATTCTTGTAAATCTGTTCAAATACCCGGATCTGGCTTTAGGGAATTTCCATTTTGTGTTTGACCCGTCAAATGAAGACCCTAAATCAGCTGGGCTTATGATGGTTACAATCGATAGTTCAACTGAGTTATGCAATGATAATGGGAAAGTCAACAGCAGTCAACATTCTGACAAGCAACCTTTGAAGCTTTACACGATTATATCGCGTGTACAGGCAAATGAGCTGGAATCGGTGGTAGGAGGTAGTGAAAGTCGAATGACATATTTGTATAAAAACCTCGGGTTGAAATTAATGGGTTTGGACAACTTTGCCCTCATAGCAAATTCCTTGATTTCTAGTATTGCTTCAAAAAGAGGGCGGGTCAGAAATCGGATCATTTCTGGAAACCGCGTTTCACACACATGA | 2247 | 40.5 | METPVSKRLLRKKSLSRSYDENLMDDYLDKQLGSSSRKRFRTKKELEKETEKEAMIALSLGFPIDALLEEEIKANVVSELDGKQQNDYIVVRNHILSRWRANVQAWLSKGQIKETVSNEYGQLIHSAYDFCLFNGYINFGVSPPFKAQMPEEATEGSVIIIGAGLAGLAAARQLLAFGFKVIVLEGRNRPGGRVYTQKMGEKGNYAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDKCPLYDPEGRPVGDEIDSKVEFIFNRLLDKVTEFRQIMGQSAADISLGSVLEKLRQLYTVATAPEEKQLLDWHFANLEYANAGCLSQLSAAYWDQDDPYEMGGDHCFLAGGNWRLIESLCDGVPIFYEKTVQTVRYSNEGVEVISGDQTYQADMVLCTVPLGVLKKRTIKFIPELPERKLEAIDKLGFGLLNKVAMVFPYVFWGEDLDTFGCLSRNSNTRGEFFLFYSYHTVSGGSVLVALVAGEAARSFESTHPSTLLHRVLSILRGIYGPKGVDVPNPIQSVCTKWGNDPLSYGSYSHVRVHSSGSDYDILAENVENRLFFAGEATNRQHPATMHGAYLSGLREASCIYRVTRGDSKQTHPRKSNRKFVGVCDILVNLFKYPDLALGNFHFVFDPSNEDPKSAGLMMVTIDSSTELCNDNGKVNSSQHSDKQPLKLYTIISRVQANELESVVGGSESRMTYLYKNLGLKLMGLDNFALIANSLISSIASKRGRVRNRIISGNRVSHT | 748 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso7g00374 | 748 | SUPERFAMILY | Homeodomain-like | 49 | 150 | IPR009057 | - | |
| Smso7g00374 | 748 | Gene3D | - | 240 | 545 | - | - | |
| Smso7g00374 | 748 | Pfam | SWIRM domain | 68 | 139 | IPR007526 | GO:0005515(InterPro) | |
| Smso7g00374 | 748 | SUPERFAMILY | FAD-NAD(P)-binding domain | 154 | 591 | IPR036188 | - | |
| Smso7g00374 | 748 | ProSiteProfiles | SWIRM domain profile. | 47 | 148 | IPR007526 | GO:0005515(InterPro) | |
| Smso7g00374 | 748 | SUPERFAMILY | FAD-linked reductases, C-terminal domain | 426 | 538 | - | - | |
| Smso7g00374 | 748 | PANTHER | FLAVIN MONOAMINE OXIDASE | 61 | 590 | IPR050281 | GO:0016491(PANTHER) | |
| Smso7g00374 | 748 | Gene3D | - | 52 | 151 | IPR036388 | - | |
| Smso7g00374 | 748 | Gene3D | - | 158 | 587 | IPR036188 | - | |
| Smso7g00374 | 748 | Pfam | Flavin containing amine oxidoreductase | 165 | 589 | IPR002937 | GO:0016491(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso7g00374 | K11450 | [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr10:80485923 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr14:82223588 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr15:84253975 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr17:15861188 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr18:1205809 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr18:66925621 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr1:25110672 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr20:63185209 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr21:7991738 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr22:64330451 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr24:941081 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr24:63249085 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr4:10080127 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr6:4878256 | Smso7g00374 | Smso-Chr7:6177385 | dispersed | |
| Smso | Smso-Chr7:6177385 | Smso9g01489 | Smso-Chr9:98214999 | dispersed | |
| Smso | Smso-Chr29:6305931 | Smso7g00374 | Smso-Chr7:6177385 | wgd |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Smso | Amino_oxidase | 1.8e-93 | CL0063 | TR | SWI/SNF-SWI3 |