AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00375 ATGAAGAACTCCATAATGATTCCTGAACGAGCAACTCTGCTTGGTTTTGGAGCTCTTGTAGCGATTACTGTCCTTTTATCATTGAAGTTGATTCGGGATCATCTTTCTGATTGGAGGAAACCCAAAGAACAAGGGGCTATTATCATGATAATTCTCATGGCACCCTTATATGCTGTTGATTCTTATGTTGGGTTGTTTAAAGTTCTTGATAAAGAGACGATTTTCGTGTACTTGGATGCGTTCAAAGAATGCTACGAGGGTCTGGTGATGTTCATGTCCTTGGTTTTGCTAGATGCTTATTTGGGTATTTCTATTATCAAGACCACAATCCCGGATGAGTTCATAGAAAGAGAGATTCACCATTTATTCCCGATGACACTCTTTCAACCTGGTCCGGTTGAGTTGAACCATCAAAACCTACAGCTCCGTAAGATTTGGATATTGCAGTTTGTAGTGATTCGCCTTGTGTGCACTGCTTTCACGGTGGTTCTGCAACTGTGTGATATGTATCCCTGTTGGCTTAGCTGTACATTCACTATAATCGTGTTTGTATCGATTAGCATAGCAGGATACGCACTTTTTGTTTTCAATCGTGTATTTGGTATAGAATTGGAGCCACATAAGGCAGTTGCTAAGTTTTATTGTGTCAAAGGGCTTCTTTTCTTCTGTTTTTGCCAGGGGCTTTTACTGAGGGGTCTAGTGGCAACGGGCATAATCAAATCATATCACTTTTGGCTTGACATGACACATATCCAACACGCGCTGCAAAACACATTGGTGATTGTGGAGACGGTGTTCTTCACAATCTTTCAGTTGTCTGCATACTTTGCTCCAACATACGAGGTGGAAATGCCCGACGGTGATCTTGTACCATACAAGGAAGAGTGA 888 41.55 MKNSIMIPERATLLGFGALVAITVLLSLKLIRDHLSDWRKPKEQGAIIMIILMAPLYAVDSYVGLFKVLDKETIFVYLDAFKECYEGLVMFMSLVLLDAYLGISIIKTTIPDEFIEREIHHLFPMTLFQPGPVELNHQNLQLRKIWILQFVVIRLVCTAFTVVLQLCDMYPCWLSCTFTIIVFVSISIAGYALFVFNRVFGIELEPHKAVAKFYCVKGLLFFCFCQGLLLRGLVATGIIKSYHFWLDMTHIQHALQNTLVIVETVFFTIFQLSAYFAPTYEVEMPDGDLVPYKEE 295
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00375 295 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 12 280 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Smso7g00375 295 SMART Solute-trans-a-2 12 280 IPR005178 -
Smso7g00375 295 Pfam Organic solute transporter Ostalpha 16 275 IPR005178 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00375 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
154191 Smso7g00375 Smso9g00605
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:115157086 Smso7g00375 Smso-Chr7:6198477 dispersed
Smso Smso-Chr7:6198477 Smso8g01797 Smso-Chr8:40054942 dispersed
Smso Smso-Chr29:6310780 Smso7g00375 Smso-Chr7:6198477 wgd
Smso Smso-Chr7:6198477 Smso9g00605 Smso-Chr9:14111958 wgd