AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00386 ATGGCGCGTGAGCTCTTCGCATGCTTCCGCAAACGTTCCTCCTCCGCCGCAACTACAGACGTCAACCAATCACAACAAACCTCCACGGACGAGGTCTCATCGGAGGAGTCAAAAAGCGGAGGAGCGGTGGTGGTGGAGCTGTTCTCGTCGCAGGGATGCGCCACATCGCCGGAGGCGGAGCTTCTGTTTTCCAGATTAGGGCGGGGAGACTTCAATCTGGAGATTCCGGTGATATTAATGGCATACCATGTGGATTACTGGGATTTTAACGGATGGAAAGATCCGTTTGGGTCGAGCCAGTGGACGGTGAGGCAGAAAGGGTATGTGGAGTCGTTGAATCTTGACACCATGTTCACGCCGCAGGTGGTGGTTCAGGGGAGAACGCAGTGCATCGGAAATGATGAAGAGGCTCTGTTATCTTCCGTCACCGCTGCACCCAGATACCCTCCGCCGGCGTTCCAGGCAACATTTGAGAGGCCTACAACAGAATCTTTGCAAGTCTCTCTGAAAGGGTCACTAAGGGTGAAATTGGAGGGCGGAGCTGACGTTATGGTGGCACTGTATGAGAGTGGGCTCGTAACCGACTGCAAGAACGGGGACAACAAAGGGCGAGTCATAGCGAACGATTTCGTGGTCAGAAAGCTTTCGAAGATGTGGTCCGTGAAGAACCAGCCTCCCAAGAAGACGTTAACTGGGACCATCGATTTTGGGTTGTGGGAAGGTTTCAACGGCACCAGATGTGGGATCGTGGTGTTCGTGCAGCAACATGGTACACATCATATATTTGGTTCCCAGCGGATTCAACTACCTGCAGATCTCTGA 822 53.16 MARELFACFRKRSSSAATTDVNQSQQTSTDEVSSEESKSGGAVVVELFSSQGCATSPEAELLFSRLGRGDFNLEIPVILMAYHVDYWDFNGWKDPFGSSQWTVRQKGYVESLNLDTMFTPQVVVQGRTQCIGNDEEALLSSVTAAPRYPPPAFQATFERPTTESLQVSLKGSLRVKLEGGADVMVALYESGLVTDCKNGDNKGRVIANDFVVRKLSKMWSVKNQPPKKTLTGTIDFGLWEGFNGTRCGIVVFVQQHGTHHIFGSQRIQLPADL 273
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00386 273 MobiDBLite consensus disorder prediction 13 36 - -
Smso7g00386 273 Pfam Protein of unknown function (DUF1223) 44 254 IPR010634 -
Smso7g00386 273 PANTHER - 1 273 IPR010634 -
Smso7g00386 273 MobiDBLite consensus disorder prediction 13 37 - -
Smso7g00386 273 SUPERFAMILY Thioredoxin-like 39 269 IPR036249 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00386 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:6423622 Smso7g00386 Smso-Chr7:6310204 wgd