AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00457 ATGGCAACCCCTTCTTCATCATCCACCTTCATCCGCAAAACCCTAATCGTCGTCTTACTCCTTACTTGTACCCTCGGTCCAAACGTACAAGCCCTTAAAGCACCAATTCGTCCACAAGACATACTCCCACTTCTGCCCCGCCAAGTTTCATGGCCTATTCTCAACTCCCTTCGAGGCGCCGCCGATCTTCTTCCGAGCTTCGTTGGCGCCGCCGCGATTGCGAATAATTCCGATTTGCACTGGAAGGGGTCTTGCTTTTATGAGAACACTGCGTGGTTAGAGCTTCATAATAAATCCGGTAGTGAATTTGGTGGAGGCACTCTTCATATCAAGGTAAGCAATGCACACAGTTGGACATGTATGGATATTTATGTCTTTGCGACTCCGTATCGTGTGACGTGGGACTATTATTTTCTGTCCCGTGAGCATACACTCGAGTTTGATGAGTGGAGTGGGAAGGCTGAGTATGAATATGTAAAACGTAAAGGAATTGCAATTTTCCTCATGGAAGCAGGAATGATAGGAACCCTAGAAGCATTATGGGAGGTCTTCCCTTTATTCACAAATACAGGTTGGGGAGAGAGTTCTAATATTGCTTTTCTCAAGAAACATATGGGGGCTAATTTTGAGGTGCGGCCCGGACCATGGGTAACAAACATAACCCAAGATGATATTCATTCTGGGGACTTCATTGCAATATCAAAAATCCGTGGTAGATGGGGCGGGTTTGAGACCCTTGAAAAATGGGTATCAGGGGCATACGCGGGTCATTCTGCTGTTTGCTTGAGGGACGCAGAAGGAAAACTATGGGTTGGTGAATCCGGACATGAAGATGAAGAGGGTCAAGATGTTATTGCTTTGTTGCCATGGGATGAGTGGTGGAATTTTGAGTTGACTGAAGATGATGCTAATCCACATATTGCTTTGCTTCCTTTGCATCCTGATCTACGGTGTAGATTTAATGAAACTGCTGCTTGGGAGTATGCACAAAGTATGGTTGGGTTGCCATATGGTTATCATAATTTGATATTTAGTTGGATAGATACTGTTAGTGATAATTATCCACCGCCTTTGGATGCTAATCTGGTTGCATCGGTTATGACTGTATGGGATCAAATGCAGCCTGCATATGCGGCTAATATGTGGAATGAAGCCTTGAATAAACGGCTTGGTACTCAGGGGCTTGAACTTGCTGATATTTTAGTGGAAGTTGAAAAACGCGGATCATCTTTTGCTGAATTACTAACTATACCCGAACAAGATGATTGGGTATATGCTGATGGAAAGTCAACTTCTTGTGTTGCTTTCGTCCTTGAAATGTACAAAGAAGCAGGACTCTTTGGAGATCTTACAGACCAAATTCAAGTTACCGAGTTTACAATAAAGGATGCTTACACTCTCAACTTTTATGAAAACAATTCGAGCCGCCTGCCAAAGTGGTGTAATGAAGGTGACACGGTTGACCTTCCATTCTGTCAAGTTAAAGGAAAATATCGAATGGAGTTACCTGGATACAATACCATTGAGCCATACCCGCAAATGACCGAAAATTGCCCATCACTACCACCAGATTATGCAAGACCCCAGTACTGCTGA 1596 43.86 MATPSSSSTFIRKTLIVVLLLTCTLGPNVQALKAPIRPQDILPLLPRQVSWPILNSLRGAADLLPSFVGAAAIANNSDLHWKGSCFYENTAWLELHNKSGSEFGGGTLHIKVSNAHSWTCMDIYVFATPYRVTWDYYFLSREHTLEFDEWSGKAEYEYVKRKGIAIFLMEAGMIGTLEALWEVFPLFTNTGWGESSNIAFLKKHMGANFEVRPGPWVTNITQDDIHSGDFIAISKIRGRWGGFETLEKWVSGAYAGHSAVCLRDAEGKLWVGESGHEDEEGQDVIALLPWDEWWNFELTEDDANPHIALLPLHPDLRCRFNETAAWEYAQSMVGLPYGYHNLIFSWIDTVSDNYPPPLDANLVASVMTVWDQMQPAYAANMWNEALNKRLGTQGLELADILVEVEKRGSSFAELLTIPEQDDWVYADGKSTSCVAFVLEMYKEAGLFGDLTDQIQVTEFTIKDAYTLNFYENNSSRLPKWCNEGDTVDLPFCQVKGKYRMELPGYNTIEPYPQMTENCPSLPPDYARPQYC 531
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00457 531 PANTHER OS01G0793500 PROTEIN 8 531 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00457 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
152036 Smso23g01492 Smso7g00457
153612 Smso2g02761 Smso7g00457
337129 Smso29g00605 Smso7g00457
353830 Smso7g00457 Smso29g00605
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4992404 Smso Smso4g01311 Smso-Chr4:17592803 Smso7g00457 Smso-Chr7:7736894
5010917 Smso Smso14g01195 Smso-Chr14:57459517 Smso7g00457 Smso-Chr7:7736894
5021461 Smso Smso16g00700 Smso-Chr16:35771286 Smso7g00457 Smso-Chr7:7736894
5076816 Smso Smso2g02761 Smso-Chr2:115060332 Smso7g00457 Smso-Chr7:7736894
5086300 Smso Smso23g01492 Smso-Chr23:65904249 Smso7g00457 Smso-Chr7:7736894
5096976 Smso Smso29g00605 Smso-Chr29:8741970 Smso7g00457 Smso-Chr7:7736894