AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00463 ATGAGGGCTCAACTCACTCGTAATTTAAGCTTAGCGTTGGATTATCGCAGAACCGTCGATTGTTCGTTTTCATCACTTCGGTCCCTTCCGGCGCCGGCGGATTATTCTCTCGTTAAATTTGGTAGGAAGAATCATCTGTTAGGCCGGTTTAATCAATCGACTGTTGCTTCAGTGCGAGATTCGTCCTGCGTGAAGACTATGGGTTCGCAATCGGCGGCGGAGGTGGAGTGGCCGGCGAACAAAGTTAGGGATTCGTTTATAAAGTTCTTCGAAGAAAGGAATCACGTTTATTGGAAATCAAGTCCGGTTGTTCCAGTCAACGATCCCACACTTCTCTTTGCCAATGCTGGAATGAATCAGTTCAAGCCTATATTCTTGGGTACTGTTGATCCTAACACTTCCTTAAGCAAACTGATTCGTGCCTGCAACACACAGAAATGCATCCGAGCTGGCGGGAAGCATAATGATCTTGATGATGTTGGCAAAGACACTTATCATCATACCTTTTTTGAAATGCTCGGTAATTGGTCATTTGGTGATTATTTTAAAGAGGAAGCCATTGGTTGGGCTTGGGAACTTCTCACAGTGGTTTATAAGCTACCTACTGATCGGATATATGCTACTTATTTTGGCGGTGATGAGAAATTGGGCCTTCCTGCTGATAATGAAGCTAGAGATATATGGCTCAAATATTTGCCACCTGCACGAGTTTTGCCTTTTGGTTGTAAAGACAATTTCTGGGAGATGGGTGACACTGGACCTTGTGGACCCTGTACTGAAATACACTTCGATAGAATTGGTGGTCGTGATGCTGCTGACTTAGTTAATAATGATGACCCTACATTGATCGAAATATGGAATAATGTGTTCATTCAGTTTAACAGGGAAGCTGATGGTTCCTTAAAACCTCTGCCCGCCAAACATGTGGATACTGGAATGGGTTTCGAAAGATTGACTTCAATTCTTCAGAACAAAATGAGCAACTATGATACTGATGTTTTTTTACCGATTTTTGATGCTATCCAAGAGGCAACTGGTGCTAGACCATATTCAGGCAAAGTGGGCCCAGATGATGTGGATGGAATGGACATGGCATACAGAGTTGTTGCTGACCACATTAGAACTCTTTCATTTGCCATTGCAGATGGTTCTTGCCCAGGAAATGAAGGGCGTGAGTATGTTTTGAGGCGCATTCTTCGCCGAGCTGTACGTTATGGAACAGAAGTACTGAAAGCAAAACAAGGATTTTTCAATGGATTGGTAAAAGTCGTGGTGGATGTAATGGGCCATGTTTTTCCTGAGCTAAAACAACAAGAGGCACACATTAGAGAGATTATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACTTTACTTCATGGAATTGAGAAGTTTAAGAAGACGGCTCAAGATGTTCAGGGAAAGATATTTAGTGGACAGGATGCATTTGTTTTGTGGGATACTTTTGGATTCCCATTGGATTTGACTCAGTTGATGGCAGAAGAAAGAGGGTTGGTGGTTGATGTTGAGGGTTTTAATACTGCTATGAATGAAGCTAGAGAAAGATCAAGAAACGCCCAGAATAAGCAAGCTGCTGTCACAATTGTCATGGACGCAGATGCCACCTCAGCACTGCATAAGAGAGGGGTATCTACAACAGATGACAGTTTCAAGTTTACATGGTTTAAGGACCACAAAAGTGTGATAAAAGCCATTTACACAGGCTCTGAGTATGTGGAACGTGCTGATGCTGGTGATGATGTTGGCATAATTCTTGAGAGCACAAGTTTTTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGGAGGCCCATCTGGATCATTTGAAGTGTCCAACGTTCAAATTTATGGTGGTTTTGTGCTTCATCTTGGTAAAATTAGTGGGGAGTTGGCCCGATTCCATGTGGGTGATGAAGTAATTTGTAAGGTGGATTATGAAAGGCGTCAACACATTGCTCCTAATCATACATGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGACTCATGTTGACCAAAAAGGATCTATTGTTCTTCCAGAAAAATTAAGGTTTGACTTCTCCCATGGGAAGCCTGTAAAGCCCGATGACCTTCGTAGAATTGAATCAATTGTGAATGAACAAATTAAAGCTGAGTTGGAGGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAAAGAGTAAACGGTTTGAGGGCTGTTTTTGGTGAAGTGTACCCTGATCCAGTTAGGATTGTTGCCATTGGTCGACAAGTCGATGAGTTATTGGCTGATCCTGAAAATGAACAATGGCTGTCCATATCTGCAGAACTCTGTGGCGGGACCCATATTTCAAATACACGCGAGGCAAAAGCATTTGCTCTTTTGTCTGAGGAGGGAATTGCTAAGGGGATTAGGAGAGTTACTGCTGTAACAACAGACTATGCTTTTGAAGCTATTAAAAAGGCATCTGAGCTTGAGCTGGAAGTTGATCTGGCATCTAAGCTTGAAGGAAGCCTTCTTGAACAGAAAGTGACTTCTTTAAACGGTCAAGTAGAGTCTGCCTCAATTCCATCAGCAAAGAAGGCTGATCTTAAGGCAAAAATCTCCATTCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGACTGCTGAAGAGAACATACGAAAAGCTGTTGAAGCTGCCACCGAGGCAGCAGAAGTTGCATCTTCTGAGGGGAAAGCCTTCTGCATTTCACATGTTGGTGTAGGGTCAGATACTGCTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAGCAGAAGGGAATGGCGGTGATGGTTTTTAGCACCGATGAACAATCAAAGAAGGCGTTAGTTTGTGCGGGTGTGCCGGAAAAAAGTGATAAAAGCAACCAGCTGAAGGTTTTAGATTGGCTGAAGGCAGCACTGAAGCCGCTGGAAGGCAAAGGTGGTGGAGGGAAAGGTGGTCTTGCTCAAGGCCAGGGACCAGATATAGAACACGTGGATGAAGCAATAGACGTTGCCAAGTCATTCGCGGCTCTCAAACTGGGCTGA 3066 43.38 MRAQLTRNLSLALDYRRTVDCSFSSLRSLPAPADYSLVKFGRKNHLLGRFNQSTVASVRDSSCVKTMGSQSAAEVEWPANKVRDSFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTVDPNTSLSKLIRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTVVYKLPTDRIYATYFGGDEKLGLPADNEARDIWLKYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIQEATGARPYSGKVGPDDVDGMDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAKQGFFNGLVKVVVDVMGHVFPELKQQEAHIREIIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGQDAFVLWDTFGFPLDLTQLMAEERGLVVDVEGFNTAMNEARERSRNAQNKQAAVTIVMDADATSALHKRGVSTTDDSFKFTWFKDHKSVIKAIYTGSEYVERADAGDDVGIILESTSFYAEQGGQIFDTGLLGGPSGSFEVSNVQIYGGFVLHLGKISGELARFHVGDEVICKVDYERRQHIAPNHTCTHMLNFALREVLGTHVDQKGSIVLPEKLRFDFSHGKPVKPDDLRRIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRQVDELLADPENEQWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKASELELEVDLASKLEGSLLEQKVTSLNGQVESASIPSAKKADLKAKISILQNQVIKAKKKTAEENIRKAVEAATEAAEVASSEGKAFCISHVGVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPEKSDKSNQLKVLDWLKAALKPLEGKGGGGKGGLAQGQGPDIEHVDEAIDVAKSFAALKLG 1021
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00463 1021 Gene3D Bira Bifunctional Protein; Domain 2 78 326 IPR045864 -
Smso7g00463 1021 Coils Coil 866 898 - -
Smso7g00463 1021 FunFam Alanine--tRNA ligase 908 1016 - -
Smso7g00463 1021 PANTHER ALANYL-TRNA SYNTHETASE 74 1017 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Smso7g00463 1021 FunFam Alanine--tRNA ligase, cytoplasmic 76 326 - -
Smso7g00463 1021 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 77 826 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Smso7g00463 1021 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 754 812 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Smso7g00463 1021 Hamap Alanine--tRNA ligase [alaS]. 77 1020 IPR023033 GO:0004813(InterPro)
Smso7g00463 1021 Gene3D - 907 1016 - -
Smso7g00463 1021 SUPERFAMILY Translation proteins 583 652 IPR009000 -
Smso7g00463 1021 PRINTS Alanyl-tRNA synthetase signature 155 166 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso7g00463 1021 PRINTS Alanyl-tRNA synthetase signature 367 383 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso7g00463 1021 PRINTS Alanyl-tRNA synthetase signature 283 294 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso7g00463 1021 PRINTS Alanyl-tRNA synthetase signature 391 404 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso7g00463 1021 PRINTS Alanyl-tRNA synthetase signature 310 323 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso7g00463 1021 SUPERFAMILY Class II aaRS and biotin synthetases 78 329 IPR045864 -
Smso7g00463 1021 Coils Coil 508 528 - -
Smso7g00463 1021 Pfam DHHA1 domain 869 1015 IPR003156 GO:0003676(InterPro)
Smso7g00463 1021 Gene3D - 653 829 - -
Smso7g00463 1021 FunFam Alanine--tRNA ligase 551 651 - -
Smso7g00463 1021 FunFam Alanine--tRNA ligase, cytoplasmic 653 828 - -
Smso7g00463 1021 NCBIfam alanine--tRNA ligase 81 999 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Smso7g00463 1021 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 330 530 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Smso7g00463 1021 SUPERFAMILY ThrRS-AlaRS common domain 652 823 IPR018163 GO:0000166(InterPro)
Smso7g00463 1021 CDD AlaRS-core 79 325 - -
Smso7g00463 1021 Pfam tRNA synthetases class II (A) 81 656 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Smso7g00463 1021 Gene3D - 549 652 - -
Smso7g00463 1021 SMART tRNA-SAD-4 754 813 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00463 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
337135 Smso29g00615 Smso7g00463
353836 Smso7g00463 Smso29g00615
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4997047 Smso Smso7g00463 Smso-Chr7:7803104 Smso10g02017 Smso-Chr10:60457855
5013827 Smso Smso1g03089 Smso-Chr1:110369343 Smso7g00463 Smso-Chr7:7803104
5022528 Smso Smso2g02654 Smso-Chr2:109892896 Smso7g00463 Smso-Chr7:7803104
5096982 Smso Smso29g00615 Smso-Chr29:8808766 Smso7g00463 Smso-Chr7:7803104