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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00490 ATGGACGGTGGAGCGGGGAAGATGGTGGTGCATCCGGCGATTGAACCGCTGTCGTATCTGATCGGAACTTGGAGAGGTCAAGGAGAAGGTGGTTTCCCCACCATATCCTCCTTCGCTTATGGGGAAGAGCTCAATTTCACTCATCCCGGAAACAAGCCTTTGATAGCTTATTCTCAGAAGACTTGGAAATTGAATTCTGGAGAGCCCATGCACGCTGAGAGCGGTTACTGGAGGCCGAAACCTGATGGAACTATTGAGGTTGTCATTGCACAGAGCACCGGTCTTGTTGAAATTCAGAAAGGAACATATGATGCAGAAAAGAAAGTGGTGAAGCTTCAAAGTGAGCTTGTTGGAAATGCTTCAAAGGTTAAGGAGATAACTCGAGTTTTTTCTCTGGTTGAAGAAGAATTATCTTATGTGGTTGAGATGGCTACCAATCTCACTGATCTTCAACCTCATCTGAAAGCTTCTCTTAAGAAGCTCTAA 486 45.47 MDGGAGKMVVHPAIEPLSYLIGTWRGQGEGGFPTISSFAYGEELNFTHPGNKPLIAYSQKTWKLNSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEIQKGTYDAEKKVVKLQSELVGNASKVKEITRVFSLVEEELSYVVEMATNLTDLQPHLKASLKKL 161
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00490 161 Gene3D - 9 161 IPR012674 -
Smso7g00490 161 PANTHER THAP4 PROTEIN 7 161 IPR045165 -
Smso7g00490 161 SUPERFAMILY Lipocalins 10 160 IPR012674 -
Smso7g00490 161 Pfam THAP4-like, heme-binding beta-barrel domain 14 160 IPR014878 -
Smso7g00490 161 CDD lipocalin-heme-bd-THAP4-like 14 160 IPR014878 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00490 K23205 THAP domain-containing protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
337148 Smso29g00638 Smso7g00490
353849 Smso7g00490 Smso29g00638
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:9029457 Smso7g00490 Smso-Chr7:8202211 wgd