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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00502 ATGGCGTCTGCCTTCTTTTCAAGAACACTTTTTGCACATCGTTTCGTTTCATCTCCAGTAATCAACCAAAACCCCCAAAAATTAGCTTCCCTTTTCTTTAAGAAACCCTTACAATCGTGGGCTAGCCCAACGACCCGTACGGCATATAGGAGGCCTACCTTGGTTCGTGGTGATATGGCTACAAGCGTGGCTGGGTCTACAGCTTCTTTTTCAACGCGGTCCATGTCGACCGGTGAGCCTGTTGTTTCGGTTGACTGGCTTCATGCCAATCTGCGTGTGCCTGATTTGAAGGTGCTGGATGCATCCTGGTACATGCCTGATGAACAGAGAAATCCACTCCAGGAGTACCAGGTTGCCCACATTCCTGGTGCTCTTTTCTTTGATGTAGACGGGATATCAGATCGAACTACTAATCTGCCACACATGTTGCCATCGGAGGAAGCATTTGCTGCTGCAGTTTCTGCTCTTGGTATTGAAAACAAAGATGGAGTTGTTGTTTATGATGGTAAAGGGATCTTCAGTGCCGCCCGTGTCTGGTGGATGCTCCGAGTTTTTGGACATGATAGAGTATGGGTATTAGATGGAGGGCTTCCCAGATGGCGTGCTTCAGGATTTGATGTTGAATCTAGTGCTTCTAGTGATGCAATTTTGAAAGCTAGTGCTGCCAGCGAGGCGATAGAGAAAGTATACCATGGCCAGCCTGTTGGTCCAGTTACATTTCAAACAAAATATCAGCCACAACTTGTATGGACACTTGAACAGGTTAAAAAGAACACAGAGGACCAAACACATCAACACATAGATGCTCGTTCAAAAGCCAGGTTTGATGGTGTTGCAGCTGAGCCTCGAAAAGGAATAAGAAGTGGTCATGTGCCTGGTAGTAAGTGCATTCCTTTTGGCCAGATGTTAGACAGCTCACAGACACTGCTATCTGCAGACCAGCTCAAGAAAAAGTTTGAACAAGAGGAGATCTCATTGGACAAACCTGTTATGACTTCATGTGGGACTGGAGTTACTGCATGCATTCTTGCATTGGGACTCCATCGACTTGGGAAGATGGATGTTCCGGTTTATGATGGATCTTGGACAGAATGGGGAGCACAAGAAGATACTCCGGTCGCCACTTCACCGCCAACTTCAACTTCTTGA 1149 46.56 MASAFFSRTLFAHRFVSSPVINQNPQKLASLFFKKPLQSWASPTTRTAYRRPTLVRGDMATSVAGSTASFSTRSMSTGEPVVSVDWLHANLRVPDLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMLRVFGHDRVWVLDGGLPRWRASGFDVESSASSDAILKASAASEAIEKVYHGQPVGPVTFQTKYQPQLVWTLEQVKKNTEDQTHQHIDARSKARFDGVAAEPRKGIRSGHVPGSKCIPFGQMLDSSQTLLSADQLKKKFEQEEISLDKPVMTSCGTGVTACILALGLHRLGKMDVPVYDGSWTEWGAQEDTPVATSPPTSTS 382
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00502 382 FunFam Sulfurtransferase 74 216 - -
Smso7g00502 382 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 253 379 IPR036873 -
Smso7g00502 382 FunFam Sulfurtransferase 245 376 - -
Smso7g00502 382 CDD TST-Repeat-1 81 204 - -
Smso7g00502 382 Gene3D - 74 216 IPR036873 -
Smso7g00502 382 CDD TST-Repeat-2 251 367 - -
Smso7g00502 382 Gene3D - 245 375 IPR036873 -
Smso7g00502 382 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 79 211 IPR036873 -
Smso7g00502 382 PANTHER THIOSULFATE SULFERTANSFERASE 77 376 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Smso7g00502 382 ProSitePatterns Rhodanese C-terminal signature. 355 365 IPR001307 GO:0004792(InterPro)
Smso7g00502 382 ProSiteProfiles Rhodanese domain profile. 92 209 IPR001763 -
Smso7g00502 382 Pfam Rhodanese-like domain 251 367 IPR001763 -
Smso7g00502 382 Pfam Rhodanese-like domain 83 202 IPR001763 -
Smso7g00502 382 ProSiteProfiles Rhodanese domain profile. 260 374 IPR001763 -
Smso7g00502 382 ProSitePatterns Rhodanese signature 1. 116 127 IPR001307 GO:0004792(InterPro)
Smso7g00502 382 SMART rhod-4 250 371 IPR001763 -
Smso7g00502 382 SMART rhod-4 82 206 IPR001763 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00502 K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
337154 Smso29g00653 Smso7g00502
353855 Smso7g00502 Smso29g00653
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr7:8337107 Smso21g02498 Smso-Chr21:43181851 dispersed
Smso Smso-Chr29:9216623 Smso7g00502 Smso-Chr7:8337107 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Smso29g00653 SST 1 372 Sulfurtransferasese/Rhodanese gene family AT1G79230 72.944 0.0 572.0
Smso29g00875 SST 16 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 64.533 0.0 774.0
Smso27g00293 SST,WGDA 1 461 Sulfurtransferasese/Rhodanese gene family AT5G55130 68.522 0.0 641.0
Smso27g00472 SST,WGDA 72 261 Sulfurtransferasese/Rhodanese gene family AT5G55130 24.885 4.16e-11 62.8
Smso26g02232 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 68.269 6.31e-107 311.0
Smso25g00010 SST 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 53.463 9.76e-137 398.0
Smso25g00392 SST 32 143 Sulfurtransferasese/Rhodanese gene family AT2G17850 50.893 1.34e-36 121.0
Smso25g01189 WGDA 352 528 Sulfurtransferasese/Rhodanese gene family AT1G09280 29.787 1.21e-13 68.9
Smso25g01345 SST,WGDA 15 144 Sulfurtransferasese/Rhodanese gene family AT2G17850 53.435 4.52e-46 145.0
Smso25g02528 . 84 461 Sulfurtransferasese/Rhodanese gene family AT2G40760 71.939 0.0 581.0
Smso24g01004 . 74 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 84.564 5.07e-95 273.0
Smso24g01298 SST 22 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 55.828 6.37e-58 178.0
Smso23g00272 SST 17 145 Sulfurtransferasese/Rhodanese gene family AT5G03455 68.702 1.30e-66 197.0
Smso23g01513 SST,WGDA 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 69.002 0.0 652.0
Smso21g01167 ACH,SST 1 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 66.667 1.52e-108 310.0
Smso21g02502 . 103 256 Sulfurtransferasese/Rhodanese gene family AT4G01050 42.138 2.09e-26 102.0
Smso21g02613 SST 134 242 Sulfurtransferasese/Rhodanese gene family AT4G01050 50.459 2.98e-25 102.0
Smso21g02981 SST,WGDA 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 32.99 1.20e-07 47.4
Smso20g00449 . 120 160 Sulfurtransferasese/Rhodanese gene family AT5G55130 63.415 5.99e-12 58.9
Smso17g00916 SST 343 577 Sulfurtransferasese/Rhodanese gene family AT1G09280 28.0 6.26e-15 71.6
Smso17g00917 SST 343 577 Sulfurtransferasese/Rhodanese gene family AT1G09280 27.888 3.08e-16 76.6
Smso17g01409 ACH 33 383 Sulfurtransferasese/Rhodanese gene family AT5G23060 64.957 3.16e-164 466.0
Smso17g03339 SST 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 64.189 1.16e-134 381.0
Smso15g00130 . 352 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 27.803 7.25e-15 72.4
Smso15g01844 ACH 6 383 Sulfurtransferasese/Rhodanese gene family AT5G23060 61.323 4.03e-165 468.0
Smso14g00318 . 84 460 Sulfurtransferasese/Rhodanese gene family AT2G40760 73.657 0.0 597.0
Smso14g00491 . 190 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 52.362 1.21e-82 250.0
Smso12g01334 SST,WGDA 24 144 Sulfurtransferasese/Rhodanese gene family AT2G17850 55.372 7.00e-43 138.0
Smso12g01537 SST,WGDA 353 565 Sulfurtransferasese/Rhodanese gene family AT1G09280 26.009 2.57e-14 69.7
Smso11g01504 SST,WGDA 351 565 Sulfurtransferasese/Rhodanese gene family AT1G09280 25.778 1.32e-13 67.4
Smso11g01711 SST,WGDA 24 149 Sulfurtransferasese/Rhodanese gene family AT2G17850 52.756 8.00e-42 135.0
Smso8g00781 . 1 230 Sulfurtransferasese/Rhodanese gene family AT2G42220 65.217 5.30e-111 316.0
Smso8g00989 SST 343 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 29.694 1.14e-17 79.7
Smso8g00990 SST 343 577 Sulfurtransferasese/Rhodanese gene family AT1G09280 27.49 4.77e-15 72.8
Smso8g01294 SST 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 65.32 9.40e-138 389.0
Smso8g02686 WGDA 9 144 Sulfurtransferasese/Rhodanese gene family AT2G17850 52.899 1.51e-44 142.0
Smso8g02687 SST 9 104 Sulfurtransferasese/Rhodanese gene family AT2G17850 48.98 1.81e-23 86.3
Smso8g02688 . 9 104 Sulfurtransferasese/Rhodanese gene family AT2G17850 48.98 1.81e-23 86.3
Smso7g00502 SST 1 372 Sulfurtransferasese/Rhodanese gene family AT1G79230 72.149 0.0 565.0
Smso7g00735 SST 12 581 Sulfurtransferasese/Rhodanese gene family AT1G09280 62.522 0.0 731.0
Smso6g01786 SST 26 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 57.862 2.00e-59 182.0
Smso6g01929 . 81 222 Sulfurtransferasese/Rhodanese gene family AT5G55130 30.769 4.48e-11 62.8
Smso6g02395 . 100 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 65.347 8.25e-97 281.0
Smso5g01282 . 74 152 Sulfurtransferasese/Rhodanese gene family AT4G27700 83.544 4.81e-47 149.0
Smso4g01190 ACH,SST 1 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 66.667 1.84e-108 310.0
Smso4g03001 SST 82 242 Sulfurtransferasese/Rhodanese gene family AT4G01050 41.975 8.17e-31 119.0
Smso4g03279 SST,WGDA 109 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 36.585 2.22e-07 48.1
Smso3g00304 WGDA 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 69.231 0.0 658.0
Smso3g00469 SST,WGDA 72 261 Sulfurtransferasese/Rhodanese gene family AT5G55130 24.885 2.44e-11 63.5
Smso2g00010 . 212 348 Sulfurtransferasese/Rhodanese gene family AT5G23060 36.232 5.58e-21 93.2
Smso2g00428 SST 3 145 Sulfurtransferasese/Rhodanese gene family AT5G03455 64.138 6.77e-68 201.0
Smso2g02779 SST,WGDA 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 69.51 0.0 655.0
Smso1g01974 . 64 191 Sulfurtransferasese/Rhodanese gene family AT4G27700 80.469 2.95e-72 223.0
Smso1g02655 SST 10 116 Sulfurtransferasese/Rhodanese gene family AT5G66040 53.271 2.48e-38 124.0
Smso1g03301 SST 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 52.278 6.29e-137 399.0
Smso1g03497 . 7 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 59.799 8.24e-83 243.0