AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00528 ATGGCACCTCCAAATGCGAACATGGACACAGCTAAAGAGCAATTCTTGAAGGAATTCGGGGAATCTTACGGTTATCCGAACGCCCCCAAGAATATTGATGATATTAGGGCTACTGAGTTTAAAAGACTTGATGCAGGGAATGTGTACTTCGATCATGCTGGTGCAACTTTGTATTCTGAATTACAGATGGAAGCCATATTTAAAGATCTTACCAACTCTGTCTATGGCAATCCCCATAGTCAAAGCAGCTCTAGTTTGGCCACATCAGACATTATAGAAGATGCTCGTCATCAGGTTCTCAAACTGTGTAACGCGTCTCCAAAAGAATATAAATGTATATTCACTTCTGGGGCAACAGCAGCTCTTAAACTTGTTGGTGAGGCTTTTCCTTGGAGTAATCAGAGCACTTTTATGTATACAATTGAGAATCACAACAGTGTTCTTGGGATTAGAGAATATGCTCTCAATAAAGGAGCTGCAGCATTACCATTAGACTTTAAGGAAGCTGCAGAGTCATCCTCCATAAAGGTTTCACATCATCCTATACAAAAGAGAAGTGAAGTTAGGGTTTTGGACAAACAGCCTACTGGCGAAATATACAATTTATTTGCCTTCCCTTCAGAGTGTAATTTCTCAGGATTGAGGTTCAACCTTGATTTAATAGACATAATGAAGGAAGATTCAGAGAAATTATTGGAAGGATCTCAATGCAGGGGAAACTGGATGGTTTTGCTTGATGCTGCAAAAGGGTGTTCTACAGACCCTCCAAAATTGTCAACATATAAGGCGGATTTTGTTGTAATGTCATTTTACAAGCTTTTTGGATATCCAACTGGACTTGGAGCTTTGATAGTTCGAAATGAAGCTGCAAAGTTACTAAAGAAGACCTACTTTAGTGGAGGCACAGTGGCTGCATCAATTGCTGATATCGACTTTGTGAAAAGAAGAGAAGGTATTGAAGAATCATTCGAAGATGGAACCCTATCCTTCTTGAATATTGCATCCATTCGCCATGGGTTTAACATCCTAAATACGTTGACCCCGTTATCCATATCAAGGCATACTTCATCACTTGCAAGATACACAAGAAATATGCTTTTGGCATTAAGGCATGCAAATGGGCAGGAGGCTTGCAAAATATATGGCCTGGAATATTTAGAGGCGGTTTATAGCGGACTTGGTCCTGTAGTTTCTTTCAATTTGAAACGGGCTGATGGTTCTTGGGTTGGCCCTCGTGAGGTGGAAAATTTGGCTTCTTTGTCTGGAATTCAACTACGGACAGGATGCTTTTGCAATCCTGGTGCTTGTTCCAAGTATCTTGGTTTATCTCATGCAGATCTTCTATCCAACATTGAGGCTGGGCATGTTTGCTGGGATGACCTTGATATATTACATGGAAAACCTACTGGAGCTGTTAGAGTATCTTTTGGTTATATGTCAACATTTGAAGATGCATGGAGATTCATGAACTTCATTGTAAGTTCCTTTGTTTTGTCACCTACCAGTACATTGAGATCCAGATCTATCCCGTCTGCCACTGAAGGTGGCAGGACAACAACAGAACATTACCTTACATCAATTGTTGTGTATCCGATAAAATCATGTGCAGGATTCAAAGTGGACAGCTGGCCTCTAAGCAGCACTGGATTGTTATATGATCGAGAATGGCTTCTCAAAAGCATGAATGGTGAAATTCTTACACAGAAGAAGGTACCTGAAATGAACTTTATTGGTACAAAGATTGACCTTGAAACAGGAATGCTTCATGTGGAATCTCCTCGGTGCAAAGAGAAGCTACTTATCGAACTTGAATCAAATTTATCTGCTGCTGTAGAAGAAATCAATGTACATGCCCAAAGATATGAAGTTATGGGCTATGATAACAAAATCGACACTTGGTTTAGTAATGCGGTTGGCCGGCCTTGTTATTTATTAAGATCTAGTTCCAGAAGTTGTACGCGTTTAAACAGAAGCAAAAACACGAGCATATGCAGAGACATAAAGACCAGATTAAACTTTGTTAATGAAGCTCAGCTCTTATTGATATCCGAGGAAAGCGTATCTGACCTCAACCATAGATTAAACTCAGTTAAAGAAGAGTCTGTTGGATTATTTAAGGAAGTTGATGCAATGAGATTCCGTCCCAATCTTGTGATATCTGGTGGCGGGCCATATGCTGAAGACAGTTGGAGTGGTCTTAAGATTGGAAAAAATCACTTCTTGTCGTTAGGCGGTTGCAATCGTTGCCAGATGATCAATTTGAATTACCGAGCTGGTGAGGTGGAGAGATCGAATGAGCCTCTAGCTACTTTAGCAGCATACAGGAGGGCAAAGGGGAAAATACTGTTTGGAATTTTACTGAGATATGTGGGTGACAATGAGATGGATGAGGAAATATCTTCAAGGCTTCAAGTGGGACAGGAAGTATACCCTGATGCATGA 2442 40.5 MAPPNANMDTAKEQFLKEFGESYGYPNAPKNIDDIRATEFKRLDAGNVYFDHAGATLYSELQMEAIFKDLTNSVYGNPHSQSSSSLATSDIIEDARHQVLKLCNASPKEYKCIFTSGATAALKLVGEAFPWSNQSTFMYTIENHNSVLGIREYALNKGAAALPLDFKEAAESSSIKVSHHPIQKRSEVRVLDKQPTGEIYNLFAFPSECNFSGLRFNLDLIDIMKEDSEKLLEGSQCRGNWMVLLDAAKGCSTDPPKLSTYKADFVVMSFYKLFGYPTGLGALIVRNEAAKLLKKTYFSGGTVAASIADIDFVKRREGIEESFEDGTLSFLNIASIRHGFNILNTLTPLSISRHTSSLARYTRNMLLALRHANGQEACKIYGLEYLEAVYSGLGPVVSFNLKRADGSWVGPREVENLASLSGIQLRTGCFCNPGACSKYLGLSHADLLSNIEAGHVCWDDLDILHGKPTGAVRVSFGYMSTFEDAWRFMNFIVSSFVLSPTSTLRSRSIPSATEGGRTTTEHYLTSIVVYPIKSCAGFKVDSWPLSSTGLLYDREWLLKSMNGEILTQKKVPEMNFIGTKIDLETGMLHVESPRCKEKLLIELESNLSAAVEEINVHAQRYEVMGYDNKIDTWFSNAVGRPCYLLRSSSRSCTRLNRSKNTSICRDIKTRLNFVNEAQLLLISEESVSDLNHRLNSVKEESVGLFKEVDAMRFRPNLVISGGGPYAEDSWSGLKIGKNHFLSLGGCNRCQMINLNYRAGEVERSNEPLATLAAYRRAKGKILFGILLRYVGDNEMDEEISSRLQVGQEVYPDA 813
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00528 813 ProSiteProfiles MOSC domain profile. 650 812 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Smso7g00528 813 SUPERFAMILY PLP-dependent transferases 40 493 IPR015424 -
Smso7g00528 813 Pfam Aminotransferase class-V 48 160 IPR000192 -
Smso7g00528 813 Pfam Aminotransferase class-V 240 485 IPR000192 -
Smso7g00528 813 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 10 497 - -
Smso7g00528 813 Pfam MOSC domain 669 809 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Smso7g00528 813 Hamap Molybdenum cofactor sulfurase [MOCOS]. 22 811 IPR028886 GO:0006777(InterPro)|GO:0008265(InterPro)
Smso7g00528 813 Gene3D - 63 345 IPR015421 -
Smso7g00528 813 SUPERFAMILY MOSC N-terminal domain-like 524 656 - -
Smso7g00528 813 Pfam MOSC N-terminal beta barrel domain 523 641 IPR005303 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00528 K15631 molybdenum cofactor sulfurtransferase [EC:2.8.1.9]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
337164 Smso29g00685 Smso7g00528
353865 Smso7g00528 Smso29g00685
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr6:21545192 Smso7g00528 Smso-Chr7:8817308 dispersed
Smso Smso-Chr7:8817308 Smso8g00124 Smso-Chr8:1686171 dispersed
Smso Smso-Chr29:9982078 Smso7g00528 Smso-Chr7:8817308 transposed
Smso Smso-Chr29:9978630 Smso7g00528 Smso-Chr7:8817308 wgd