AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00605 ATGAGAAGTTTCTGTCAAAGGCCAGAAAATCCTCTTTTGTTGCTTGGACAATATAGTGATGAAGAAGTAGAGGAAGAATCGAGTAAAGAAATAAACCATGATGCTAGAGAAAAATCTCCAACTGTGCTGGATGAGCAGGTAAATGTAGACAGTCATGATAGTACAAGAGCAGTTGAAGATAAAAACCTTTTTACCCGAAAACTTGATCAAGAGAACAAGGAACCTTCTTCAATGGATGTATTGCCAGATTTGGAGAAAATTAGTGTTGTAGAAGATGATAAACCCGAGTCTCCACACAGAGATACAGATGCATTGGATCTGACCTCTGTTTCTTTGAAATCTGATATGCAGACAACAGGGGATGTGGGTTCAGGCTGGAAAATGGTGTTGCATGAGGAGAGTAATTCATATTATTACTGGAACATTGTGACTGGTGAAACTTCTTGGGAAGTCCCTGTTGTTCTAACCCAAGGAAATGAATCAGCGTATGATCTTAAATCTGGCCCAAAAATTGAAGAAACACATGCAACTTCTGTTGATACACAAGCTAATAATGAATCCACAAATGATATGGTTTTTGAGGCCAAAGAAATCAATAGTTCTAGGATTGAATCAAAAGTCCATGATGAAAACTGTACGGATATCATGGGAAATGATAAAGATGAGTGCTTTGCTACACAATCTCATGGTGCTTTGAGTAATGCGGAAGCCCACTATAATGATTCTGTTATTCAAGATATGAGTGGTCATGTATATCATGGGACAGGTGGCGAATCTTCTGATTCTTTTCGTCTTCTACAACTTGGAGAAAATCTATTAGAAAGATTAAAATCTTTGAAAGGGCCTGAAGGGTTCAGTGACCAGATATCAAAGTTGATGTTTGAACTTGATATAAGACTTGCAGACATTAAGTCACTAGTACGGTATGGATCATCATTGCTTCCTTTTTGGTTGCATTCTGAAAACCAGCTGAAAAATCTGGAATCTTCCATCAACAATGAAGTTATAAAACATTCACAATTAGCACACATTGGTGAAATTAATGAGCCGGAAAACAGATTTCAGGAAAACATTGGTGAATCCAATGAAAATGCAATTTCAGCAGATATTGACCCAAATGTGGGCCACCACTCGGTGGAAGATGATGACATGGACGTGGAGATGGAAGTTGAAGATACTACAATTCATTCTAAAGATGAAGCGGGCACCCAGAACGCCCCCCACCTTGATCAATCTATTTCACCAATCCTGCATGGACACCTTGATTCTCGTGGAGTTGAACAAGACTCTGACGTTCCACTTCCTCCGAATGATGAATGGATTCCTCCACCACCACCACCGGATGAAGAACCATTACCTCCTCCACCACCAGACGAGCCATCTGAAGCTGCCTTCGCGCCACCACCATCAGAGAAGCAGACAACACAACCATATTCTTATGGAGAACAATATAGTTTTACATACCCGGGCTCTGGTTTTAATTACTATGGTCAAACAAACACTGAAATCTCAAGTAACGGTTATTATGTAGATGCGAATGGGTCTCATATAGCTGCTCCCCTCTCAACAGTTTATTATGCACCAGTGCTGAACCCAGAGCCCGTGACATATTACACCCTACAAGATGGGGCCATACCAGCTGCACCAGTCATCAGTGGCATAGAAACTTCTGGTTTGCAGAATTCGGCTTATGCAAACATCATCTCTGATCAAACTAAATCATCTACAGTGGTTCCTTCTATTTCGGCCTCTTCAAATGTACCAGAAAGCTCTAGTGTAACACGTGATGCTTCTGTGGTGTCTGCTCTTGCTGTTGCTCCAACAGAAACGATTCCTAAGGTTCAACCTAAAGTTACACGTATCAAAAAAAGAACCGTTGCAGCGGTTCCCACTTTAAGGTCCAACAAGAAAGTTTCTGGCTTGGTGGATAAGTGGAAGGCTGTTAAAGAGGAATTGCATGAAGACGAGGAAGATGAACCTGAAAATGCATTAGAGGTTTTAGAGAAGAAACGACAACGGGAAATTGAGCAATGGCATGCCCAGCAGATTGCATCCGGAGAAGCCAAAGACAATGCCAACTTTCAGCCGCTCGGTGGTGATTGGCGGGAGAGGGTTAGGCGAAAGAGAGCTAAAAAATCAACACAAGCTGAAGAAAATCTTGCAGATACCATTGATGAATCAAAACAACAGCCTGATCTTGCTGAACTTTCAAAACAACTACCAACAGGATGGCAGGCATATTGGGATGAATCATCAAAGCAGGTTTATTATGGTAACTCGATGACATCAGAGACAACATGGACTAAACCGACAAAGTAA 2319 41.27 MRSFCQRPENPLLLLGQYSDEEVEEESSKEINHDAREKSPTVLDEQVNVDSHDSTRAVEDKNLFTRKLDQENKEPSSMDVLPDLEKISVVEDDKPESPHRDTDALDLTSVSLKSDMQTTGDVGSGWKMVLHEESNSYYYWNIVTGETSWEVPVVLTQGNESAYDLKSGPKIEETHATSVDTQANNESTNDMVFEAKEINSSRIESKVHDENCTDIMGNDKDECFATQSHGALSNAEAHYNDSVIQDMSGHVYHGTGGESSDSFRLLQLGENLLERLKSLKGPEGFSDQISKLMFELDIRLADIKSLVRYGSSLLPFWLHSENQLKNLESSINNEVIKHSQLAHIGEINEPENRFQENIGESNENAISADIDPNVGHHSVEDDDMDVEMEVEDTTIHSKDEAGTQNAPHLDQSISPILHGHLDSRGVEQDSDVPLPPNDEWIPPPPPPDEEPLPPPPPDEPSEAAFAPPPSEKQTTQPYSYGEQYSFTYPGSGFNYYGQTNTEISSNGYYVDANGSHIAAPLSTVYYAPVLNPEPVTYYTLQDGAIPAAPVISGIETSGLQNSAYANIISDQTKSSTVVPSISASSNVPESSSVTRDASVVSALAVAPTETIPKVQPKVTRIKKRTVAAVPTLRSNKKVSGLVDKWKAVKEELHEDEEDEPENALEVLEKKRQREIEQWHAQQIASGEAKDNANFQPLGGDWRERVRRKRAKKSTQAEENLADTIDESKQQPDLAELSKQLPTGWQAYWDESSKQVYYGNSMTSETTWTKPTK 772
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00605 772 MobiDBLite consensus disorder prediction 26 81 - -
Smso7g00605 772 ProSiteProfiles WW-rsp5-WWP domain profile. 738 772 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 Gene3D - 733 772 - -
Smso7g00605 772 MobiDBLite consensus disorder prediction 436 464 - -
Smso7g00605 772 MobiDBLite consensus disorder prediction 391 411 - -
Smso7g00605 772 MobiDBLite consensus disorder prediction 423 478 - -
Smso7g00605 772 Pfam WW domain 124 152 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 Pfam WW domain 740 770 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 SUPERFAMILY WW domain 113 154 IPR036020 GO:0005515(InterPro)
Smso7g00605 772 MobiDBLite consensus disorder prediction 700 732 - -
Smso7g00605 772 SUPERFAMILY WW domain 739 771 IPR036020 GO:0005515(InterPro)
Smso7g00605 772 CDD WW 124 153 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 MobiDBLite consensus disorder prediction 1 81 - -
Smso7g00605 772 CDD WW 741 771 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 ProSitePatterns WW-rsp5-WWP domain signature. 744 770 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 PANTHER OS06G0298400 PROTEIN 356 772 - -
Smso7g00605 772 Gene3D - 120 161 - -
Smso7g00605 772 ProSiteProfiles WW-rsp5-WWP domain profile. 120 154 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 MobiDBLite consensus disorder prediction 689 733 - -
Smso7g00605 772 SMART ww-5 121 154 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 SMART ww-5 739 772 IPR001202 GO:0005515(InterPro)
Smso7g00605 772 ProSitePatterns WW-rsp5-WWP domain signature. 126 152 IPR001202 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00605 K24774 formin-binding protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
337200 Smso29g00754 Smso7g00605
353900 Smso7g00605 Smso29g00754
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:11218253 Smso7g00605 Smso-Chr7:10538940 wgd