AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00612 ATGGAGCTGGTGCCATACTCGGATCCTAACAACTCCTCTGTCTCACCGCCGTGGCAAGACATGTTCCGATCAGCCTCTACCCGCAAACCAGATCCATCTCCCCCTCCCCAACCCCAACCCCAACCCCAACCCCCGCAGCAATCCACCACCAATCCAGATCAGAATGAACCATCTTCTCTCTCCAGCGACCCTCAGGTACGTCTCGCACTCTACATAGCCATGGCACACGCCGGCTTAGCTTTTGCCATCTTCGTGCTCTACGGCGTCTCCAAATTACTCCAAGAATATCTCCGCCCAATCCTCTGGGCTGTTCTTTGCTCAATTCCCCTTCGAGGAATCCAGCAAACCCTAGTTTCGTTCTGGACCGAACCCTTGGAATCAGGTCTCACTGAAACTATACTAGCTGTACCGGTATCTGTATACAGGGTTTTCATCGGTACACTCGTTGATATCAGAGACGTTTTGCTCAAAATCATCCGCCGGAAGAAGAAGAAACCGGATTCCGTGAATCGAAAACGGAGCGGGTTTTCGATTCTGTTGAGATGGTTGGTTTCGTTTTGGGTTTTTGTAATGGCGTATGAACAATTTGGTGTTCTTGGTGCTGTCACTCTGTTAGGGTTAGGGTTTATGTTTACATCTAGCCATGTGAAGTCCACTATGTCTGCTGTTTCTTCGTTTCGCAGCTCTAGTTTTCAACAGAGTCGTCATACGGCTTTCCTGACCAAAGGGATTTTAAAAAGACTGGAAACAATTGTTGCACTTGGATTGATTGTTGGTATGATTGTGGGTTCTGTGACTGGGATTATGTTTTTTTCATACAAGATTGGAGTTGAAGGGAAGGATGTGGTTTATTCGATAAAGTCTCATGTTGAAGAGAACAATTATGCAGAAAAGATAGGATTAAGGCAATGGATGGATGAGAATAATGTGCCTGGAATGGTGGATAGATACACAACCCAGTTTTATGAAACTGTGTATGAACAGATTGATAATTTAGCTGTACAGTATAACGTGACGGAGATTGTGCAAGAAATGAAACAGTTGATTGCACCGCGGTTAAACCAGGAAAATGCTTCTGCACCTTCTACTGCATTAGCAACTCCAAACCCATATACGGAAAAGATACTGAGTTTGAAAAGGATGGTTACTAATCGGGAATGGTCAGCGATTTATCCAGAAGTGAATGCTATGTTGAACGAGGCGCGTGTCAGCAGAGAGGATATGATTGAGAGAGCAAAAGCAATTGCTTTTCAAGGGAAAGATGTTGTTCAACGTGTGCTCGCAAGTAGTAAATCGATTGTGGGTGGTGGGACTAAGCTTGTTTTCATAGTGATTGAATCGATTGTTTCTGGTGCAGCGGAGTTTTTAAATTTTATTTCTCAGTCAATGGTTTTCATATGGGTTTTATACTCTTTAATAACATCGGATTCTGGTGGGGTTACAGAGCAAGTTATGTATATGATTCCGATTTCAAGATCCACTAGAACGCGGTGTGTTGAGGTTCTTGATAAAGCTATTTCTGGTGTTCTTTTGGCTACAGCAGAGATTGCATTCTTTCAAGGGTGTCTCACTTGGCTTTTGTTTAGATTATTTAATATTCATTTCTTGTATACGTCAACGTTGCTTGCGTTTATTAACCCTTTGCTCCCGATATTTCCTTATTTTTTCTCAACGATCCCAGCTGCATTGCAACTGGTGCTGGAAGGGAGATACATAGTTGCCATTTGTTTGTTTATTATTCATCTTGTGCTTATGGATTATGGAACTACTGAAATTCAAGAGGACATACCTGGTCATAGCGCGTATCTTACTGGGCTTAGCATCATTGGTGGAGTGGCATTGTTCCCATCTGCTTTGGAGGGAGCGATATTGGGGCCATTGATAACAACAGTTCTTATTGCTCTTAAGAATTTGTATGCAGAATATGTTTTGGATGAACCAAAGGAAGAGAAAAAAGAGTAA 1962 42.86 MELVPYSDPNNSSVSPPWQDMFRSASTRKPDPSPPPQPQPQPQPPQQSTTNPDQNEPSSLSSDPQVRLALYIAMAHAGLAFAIFVLYGVSKLLQEYLRPILWAVLCSIPLRGIQQTLVSFWTEPLESGLTETILAVPVSVYRVFIGTLVDIRDVLLKIIRRKKKKPDSVNRKRSGFSILLRWLVSFWVFVMAYEQFGVLGAVTLLGLGFMFTSSHVKSTMSAVSSFRSSSFQQSRHTAFLTKGILKRLETIVALGLIVGMIVGSVTGIMFFSYKIGVEGKDVVYSIKSHVEENNYAEKIGLRQWMDENNVPGMVDRYTTQFYETVYEQIDNLAVQYNVTEIVQEMKQLIAPRLNQENASAPSTALATPNPYTEKILSLKRMVTNREWSAIYPEVNAMLNEARVSREDMIERAKAIAFQGKDVVQRVLASSKSIVGGGTKLVFIVIESIVSGAAEFLNFISQSMVFIWVLYSLITSDSGGVTEQVMYMIPISRSTRTRCVEVLDKAISGVLLATAEIAFFQGCLTWLLFRLFNIHFLYTSTLLAFINPLLPIFPYFFSTIPAALQLVLEGRYIVAICLFIIHLVLMDYGTTEIQEDIPGHSAYLTGLSIIGGVALFPSALEGAILGPLITTVLIALKNLYAEYVLDEPKEEKKE 653
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00612 653 MobiDBLite consensus disorder prediction 1 61 - -
Smso7g00612 653 MobiDBLite consensus disorder prediction 29 47 - -
Smso7g00612 653 PANTHER TRANSMEMBRANE PROTEIN 21 651 IPR002549 -
Smso7g00612 653 MobiDBLite consensus disorder prediction 1 22 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00612 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
148962 Smso1g02401 Smso7g00612
153631 Smso3g00252 Smso7g00612
337203 Smso29g00757 Smso7g00612
353903 Smso7g00612 Smso29g00757
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:96649644 Smso7g00612 Smso-Chr7:10643679 dispersed
Smso Smso-Chr25:12682246 Smso7g00612 Smso-Chr7:10643679 dispersed
Smso Smso-Chr15:51536347 Smso7g00612 Smso-Chr7:10643679 transposed
Smso Smso-Chr27:3757794 Smso7g00612 Smso-Chr7:10643679 wgd
Smso Smso-Chr29:11260170 Smso7g00612 Smso-Chr7:10643679 wgd
Smso Smso-Chr3:4591613 Smso7g00612 Smso-Chr7:10643679 wgd