AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00616 ATGACCGGCGGCGGCGACTGCGAAACTAGGGTTTCGATTCCGAACGCTGCTCGGAAGGCAATTCAAGAAGTCACGAAGAGCCTACGATACAAGCACTGCGATGAGTTCGTGTACACAACGCTCAATGACTCCGGTATGGATCCTACCGAAGCTGGCCGGAGATTGAAGATGATTCATGATATCAGAGAGATCGCCGGAAAGCACAGCGTAGAGGACGTGTATACAATGCTCAAAGAATGCAACCTGGATGCTAATGAAGCTGCTCAGAGGCTATTGTATATCGATACTTTCCATGTGGTTAAAAAGAAACATGACCGGAGGAAAATGATAACCAGTGATGCCTCTCAAGAGAATAAACAGACACGGGGAAATCAATGGAGGGGAGATAAGGGTGGGCGAGGGACTTTCTATTTATCAAAAGTTTTTGAAGATGTTGGAGGTGGAAGAAATTTGAGTTCAGGGAAGGAATACGGTGTTACTAATCGCATAGAGAGGGTTTCGGGGCCATCTTTGCCAGGCAATATGGGAAAAGAGAACAACGTAGTACACGTGTCAAATTCTTGTGCCAATGCTAATGGTACACCGGCTATATCCAATGGGAGTTACAATCAAAAGCTTGCATCCGAACCATCTGCAGATGTCGCATCCTCTACTTCAGATCATGTTGTGGTTTCATCTCAGAACACAAAGCACATGTGTGCTGTGGGTACAATAAAATGTGAGATTGTAAAACGTAGTGGTTCTGATGATTCAAATGCAAGAATTCCAGCTGGCATGAAGTTTAGTGCTGATCAGTTAGGTATTGGCACCATTACAGTTATTGCAGAAGCTGCAGATTCTGACCTAAAATCCGATGTAGCTGAAAAGAATCAGATCTCAGAGTCTTTGCAGCCTCTTTTGTTGTCAACCCAAAACAGTTCACAGGTTGTCAATCCTATTCAGGATAGCGAGCAGCCTCCTCAATTATTAAACGAGCCTCTAAAAGTGAATGCTTCCGAGCATACATATTCGGTTTCTGAAGAAGAATCTGAATCGAATATATCAACTCCAAAACTTGATGTGATGACAGAGAAATTGACTTTATCTTCTCACCAAGCTGTTATTTTCCCTGATCATCTACAAGTCCCTGAAAATTATAAATGTCAATTCGTATTTGGAAGTTTGGATGCTACTCCTGATGATTGCAAACCTATATCCGTGACTGGATCTACTCAGCAAAATGAAGTTGTAAAAGAACATTCTTCGAGCAACGAAAATGTTTCTATAATAGCCCAGGAAGATGAAAATCAAGATCATGTTTCTGAAGATATATTACCTTCAGATGATAACATCTCATCTGATGCTTCTGCCCAAAAACACGAGCAGACAAAGGCGGAGATAATCCCCCCTCTCCCTTCAACAGGGTTTCAGAATCTTCCAGTTCTTCAAACTACCAGGGACTACAGTTATGGTTATATGCCATCTCTGATGGGCCCACATTTTGTACAACTTGATATACCTGAGCTACAGAATGGGAACTCTCAAGTTGTAGCTGCAGCGAGCCAACCTCCTGTAACACAACCTGCAATCGCGGGCCAGAGTTCTATAGCATTATCTCCACCTCTGTTTCCATATTTCAGACCATATCCAAATTACATTCCTTATAATCCATATTTCCCACATATGTATTTGCCACAAAATGCTCACTTGTTTAACCATGGGGTTTTCCCTCAGCCACCACCACCTACAGGCAATGTTCACCATTTGCAGGCGGCGGCGGCAGCAGGGGTGAAATCACCTACTCCTTCACAGAACAAACAGGGAAATAATGAAGATATTGCTACATCTGAAGCAAAAGTTAACAATATTCAGTCAACGGTTCAACAGGGTGAAGATCCACAAGCTTGGGCTCGTGCACCCGTCCATGATATACCTACCTTATTGCCAAACTATTTCTACAACTTTCCTCAAGGACCACACATGGCGGCCTTTTCACCTTTACAAGCTGCTGCTCTCTATCATTCTTCGCAAACAATGACCGCTCAATCTACCATACAACCGCCACTCATGTGTCAACCACAACCCACAGGCGCCACGGTTGAACCCCTGGTCCAATCATCCGCTTCTTACCATCAACATCAGCATGCACCACAGGTAAACATGAACGACACTGCTGTAGTGAACATGGGGACTGGTTGA 2178 43.76 MTGGGDCETRVSIPNAARKAIQEVTKSLRYKHCDEFVYTTLNDSGMDPTEAGRRLKMIHDIREIAGKHSVEDVYTMLKECNLDANEAAQRLLYIDTFHVVKKKHDRRKMITSDASQENKQTRGNQWRGDKGGRGTFYLSKVFEDVGGGRNLSSGKEYGVTNRIERVSGPSLPGNMGKENNVVHVSNSCANANGTPAISNGSYNQKLASEPSADVASSTSDHVVVSSQNTKHMCAVGTIKCEIVKRSGSDDSNARIPAGMKFSADQLGIGTITVIAEAADSDLKSDVAEKNQISESLQPLLLSTQNSSQVVNPIQDSEQPPQLLNEPLKVNASEHTYSVSEEESESNISTPKLDVMTEKLTLSSHQAVIFPDHLQVPENYKCQFVFGSLDATPDDCKPISVTGSTQQNEVVKEHSSSNENVSIIAQEDENQDHVSEDILPSDDNISSDASAQKHEQTKAEIIPPLPSTGFQNLPVLQTTRDYSYGYMPSLMGPHFVQLDIPELQNGNSQVVAAASQPPVTQPAIAGQSSIALSPPLFPYFRPYPNYIPYNPYFPHMYLPQNAHLFNHGVFPQPPPPTGNVHHLQAAAAAGVKSPTPSQNKQGNNEDIATSEAKVNNIQSTVQQGEDPQAWARAPVHDIPTLLPNYFYNFPQGPHMAAFSPLQAAALYHSSQTMTAQSTIQPPLMCQPQPTGATVEPLVQSSASYHQHQHAPQVNMNDTAVVNMGTG 725
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00616 725 Pfam GBF-interacting protein 1 N-terminal 56 108 IPR009719 -
Smso7g00616 725 MobiDBLite consensus disorder prediction 108 131 - -
Smso7g00616 725 PANTHER FLOCCULATION PROTEIN (DUF1296) 602 715 IPR044277 GO:0051082(PANTHER)
Smso7g00616 725 MobiDBLite consensus disorder prediction 426 453 - -
Smso7g00616 725 SUPERFAMILY UBA-like 56 108 IPR009060 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00616 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337206 Smso29g00761 Smso7g00616
353906 Smso7g00616 Smso29g00761
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:11284570 Smso7g00616 Smso-Chr7:10664062 wgd