AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso7g00670 ATGAACAGCAAATACCTAAAACTCTTCGTCTTCCTCTTCATCATCAACTCAATCACCCTCTCCCTCTACTTCTCCTCTCATCCAGATTTCTTCCGCCGCCACCGCCGTTCAACCTCCGACACTCACCATTCCTTACCCCAATCCACCTTCTCCGATCACACGCAGCTCATATCGTTCTCCAATTCCAATAAACCCTGGCCGATCTTACCTTCTTACCTCCCATGGTCGTTAAACCCTAACACACCTTTCAGATCATGCGAAGCCTATTTCGGCAATGGCTTCACCCGCCGCATCGATCTGCTCAAGCCGCCGCCAGATATTAACCGGAAATCGTTGACCGGCGGAGCCGGAGGTGGATGGTTCAGGTGCTTTTACAGTCAGACGTTGCGGAGCTCGATTTGCGAGGGCGGGAGGGTGCGGATGCATCCGGAGAAGATTAAGATGTCAATCGGTGGAGAGGTATTGGAGAGTGTGATTGGCAGATCGGAGGATGAGGAGTTGCCGGAGTTTGAATTCGGTGCGTTTGATCTGGAGGTTGGTGAGAAATCGAAGAGTCATGGTAAGAAGCTTGCTAGTGAGGGTTTTTTGAATGAGTATATGCAGAAAGGGGCAATCTTAAGGCATACTATGAGAGATTTGATTGATTCAATTCAGTTAATTGGCGCCAATGAGTTTGAATGCTCTGAGTGGGTTGAGGAGCCAACACTTTTGATAACGAGGTTTGAGTATGCAAACCTTTTTCACACCATAACAGACTGGTACAGTGCCTATGTGTCTTCAAGAGTTACTGGCTTGCCAAACAGACCTCAATTAGTTTTTCTAGATGGTCACTGCATGACACAATTGGAAGAAACATGGAAAGCGGTATTCTCGGGTTTAAGATACGCTAAAAATTTCAGCGGGCCCGTTTGCTTTCGTCATGCTATCCTTTCACCTTTGGGCTATGAAACCGCCATGTTCCGTGGGCTTTCTGAAACCATCGATTGTGATGGGGCTTCAGCCCATGATTTATGGCAGAAGCCCGATAACTCAAAAACAGCCCGAATCTCAGAATTCGGGGAGATGATAAGAGCTGCCTTTTCACTTCCTTTACACCAACAACACCACAGCTCAAAATCAGGGTCACGAAATCATAACGTCTTGTTTGTCAGGCGTGAAGATTATCTGGCACATCCCCGCCATGCTGGCAAGGTCCAATCAAGACTCAGCAACGAACAAGAAGTATTTGACGCGTTAAAAAGCTGGTCAACGGGTCATACCGAATGCAAAATTAATTTAATTAATGGGCTTTTTGGGCATATGACTATGAAAGAACAGGTGAGAGCTATTCAAGATGCATCTGTTATTGTGGGTGCTCATGGGGCAGGGCTCACTCACATAGTGTCAGCAACACCAGAAACAGAAATACTAGAAATCGTTTCTAGCGAGTACAGAAGGCCTCATTTTGAACTAATTTCAAAATGGAAAGGACTAAACTACCACCCGATATATTTAGGTGGGTCCCACGCTAGTCCGCCAGTAGTTATCAACAAGCTCAGGGACATTTTGAAGAGCTTAGGATGCTGA 1566 46.36 MNSKYLKLFVFLFIINSITLSLYFSSHPDFFRRHRRSTSDTHHSLPQSTFSDHTQLISFSNSNKPWPILPSYLPWSLNPNTPFRSCEAYFGNGFTRRIDLLKPPPDINRKSLTGGAGGGWFRCFYSQTLRSSICEGGRVRMHPEKIKMSIGGEVLESVIGRSEDEELPEFEFGAFDLEVGEKSKSHGKKLASEGFLNEYMQKGAILRHTMRDLIDSIQLIGANEFECSEWVEEPTLLITRFEYANLFHTITDWYSAYVSSRVTGLPNRPQLVFLDGHCMTQLEETWKAVFSGLRYAKNFSGPVCFRHAILSPLGYETAMFRGLSETIDCDGASAHDLWQKPDNSKTARISEFGEMIRAAFSLPLHQQHHSSKSGSRNHNVLFVRREDYLAHPRHAGKVQSRLSNEQEVFDALKSWSTGHTECKINLINGLFGHMTMKEQVRAIQDASVIVGAHGAGLTHIVSATPETEILEIVSSEYRRPHFELISKWKGLNYHPIYLGGSHASPPVVINKLRDILKSLGC 521
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso7g00670 521 PANTHER PUTATIVE-RELATED 38 521 IPR007657 GO:0016757(InterPro)
Smso7g00670 521 Pfam Glycosyltransferase 61 367 469 IPR049625 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso7g00670 K03714 glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38]
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Event-related genes

Select Gene_1 Gene_2 Event_name
337229 Smso29g00805 Smso7g00670
353929 Smso7g00670 Smso29g00805
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:12046859 Smso7g00670 Smso-Chr7:11750943 wgd