Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca1g02949	ATGTACCGGCATATAGCGGAAAGCGAGTCCATGACTCGTGGTGGACAACCCAGTGATAGTGGAGATGTGGCTGTGACTCTTGATCAAGTACCTAGATGGAGTGATGGGGATTTTAGATATTCTTATGAGATTGAAGATCCTAGTATGCATTTTCCTGATCCGTTAGCTTCCTCTTCTGGGGTAGAGAATAGTGGAAAAGTTTCTAGGTTTCCGGTTAATCATGATGTTAATTCCAAGATTTATCTTTGGAGAGGGAATCCATGGAATCTTGAGGTCGATGCGGTTGTCAACTCCACAAATGAGAACTTGGATGAAGCACATTGTAGTCCTGGTTTGCATGCTGCAGCTGGGCCTGGTCTTGCTGAAGAATGTGCAACATTGGGTGGATGCAGAACGGGGATGGCAAAAGTCACTAATGCATACGATCTTCCCGCAAGGAGAGTTATACATACAGTTGGGCCTAAGTATGCTGTAAAATATCATACTGCAGCAGAAAATGCTTTGAGTCACTGCTATCGTTCTTGTCTAGAACTCCTCGTTGAAAATGGGCTTCGAAGCATTGCTATGGGTTGTATATACACGGAGGCAAAAAATTACCCCAGGGAACCAGCAGCCCACGTGGCAATAAGAACTGTGCGGCGGTTTCTTGAGAAACAAAAGGATGAAATTACAGGTGTAGTCTTTTGCTTAACAACAACAAATGATACTGAAATATATAAGAGATTACTTCCTCTGTACTTTCCCCGAGATAAAAAGGAGGAAGAGATTGCTATTTCGAAGCTTCCTGCTGATGTTGGAGATGAAAATGGAGAAACAGTAATAGATGAAAGAAAAATCAGAATTCAGCCCTTGCCGAATATCAAGAAGAATATTCCTAAACCTCCACGAGCTTCCCTAGATGTTCCTGTTAGTGATCAAGGATTAGCTAGGCGGAACTCATCATATTTAGAATCATATTTAGATCCTGCTTTTATGTCCATAATTAAAGATCCTGATCAGCGGCGCAAGGAACAATGGGAAAGAACCGCTCGAGCACAAAATGGGTTCAACTTTGCCAAACTGCTAGGGTTTGGTGAATTGGGGGGACCACCGCTTTCTGCTGCAGAAGAATACTCGCTACATTCTAGATACCTAGCCAAAGCAAATTCTCTTAATCTTTCTGAAATAGCAGAAATGAAGATTCTGTACCGGGGAGGAGTAGACAGTGAAGGCCGTCCTGTGATGGTTGTAGTTGGAGCACATTTTCTGCTTCGTTGTCTTGATCTTGAAAGATTTGTTCTATATGTAGTGAAGGAGTTTGAGCCCTTGATCCAAAAACCATATAGCATTGTTTACTTCCACTCGGCTGCATCTTTACAAGTGCAGCCAGATCTGGGATTTATGAGGAGGTTGCAGCAAATACTTGGTAGGAAAAGCCAACGGAATCTTCATGAAATATACATCCTCCACCCAACTTTTGGACTGAAGGCTGCCATACTTGCGTTGCAACTATTAGTGGACGGCATGGTGTGGAAAAAGGCTGTATATGTTGATCGACTTCTTCAGCTTTTCAGATACGTTCCTCGTGAACAGCTAACCATCCCCGATTTCGTGTTCCAGCATGATTTGGAAGTGAACGGAGGAAAGGGGCTTATCGTGGATCCAAGAACAAAATATGTATATCAGCGACCTTAG	1674	43.01	MYRHIAESESMTRGGQPSDSGDVAVTLDQVPRWSDGDFRYSYEIEDPSMHFPDPLASSSGVENSGKVSRFPVNHDVNSKIYLWRGNPWNLEVDAVVNSTNENLDEAHCSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLVENGLRSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDEITGVVFCLTTTNDTEIYKRLLPLYFPRDKKEEEIAISKLPADVGDENGETVIDERKIRIQPLPNIKKNIPKPPRASLDVPVSDQGLARRNSSYLESYLDPAFMSIIKDPDQRRKEQWERTARAQNGFNFAKLLGFGELGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKILYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQVQPDLGFMRRLQQILGRKSQRNLHEIYILHPTFGLKAAILALQLLVDGMVWKKAVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYQRP	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca1g02949	557	SMART	YBR022w-8	79	208	IPR002589	-
	Soca1g02949	557	CDD	SEC14	392	528	IPR001251	-
	Soca1g02949	557	Gene3D	Leucine Aminopeptidase, subunit E, domain 1	17	252	IPR043472	-
	Soca1g02949	557	CDD	Macro-GDAP2-like	78	246	IPR035793	-
	Soca1g02949	557	SUPERFAMILY	Macro domain-like	65	276	IPR043472	-
	Soca1g02949	557	SMART	sec14-4	388	534	IPR001251	-
	Soca1g02949	557	Pfam	Macro domain	96	208	IPR002589	-
	Soca1g02949	557	Pfam	Divergent CRAL-TRIO domain	404	535	IPR001251	-
	Soca1g02949	557	SUPERFAMILY	CRAL-TRIO domain	386	525	IPR036865	-
	Soca1g02949	557	PANTHER	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED	22	281	-	-
	Soca1g02949	557	MobiDBLite	consensus disorder prediction	1	24	-	-
	Soca1g02949	557	Gene3D	-	387	538	IPR036865	-
	Soca1g02949	557	ProSiteProfiles	Macro domain profile.	67	247	IPR002589	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca1g02949	K24997	ganglioside-induced differentiation-associated protein 2
	Soca1g02949	K23518	O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	154841	Soca1g02949	Soca4g03732
	154842	Soca1g02949	Soca4g03734

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr1:32782683	Soca4g03733	Soca-Chr4:67766924	dispersed
	Soca	Soca-Chr1:32782683	Soca4g03731	Soca-Chr4:67766924	wgd