AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca1g02969 ATGTATGTAGTGGATAGCAGAGGTGGTGCCATAGCATGTATGCTGCTTGCACTCTTTTTCCTAGGAACATGGCCTGCCATTTTAACATTGTTAGAAAGACGTGGCCGTCTTCCTCAACACACTTATCTTGATTACACAATCACCAATCTTTTGGCTGCTGTAATAATTGCTTTTACATTTGGGGAATTTGGCCATAAAAATGATGGCAAACCCAACTTTTTAGTCCAGCTTTCTCAGAATAATTGGCCGAGTGTTCTATTTGCGATGGCGGGTGGGGTGGTTTTAAGTCTTGGAAATCTGTCGACACAATATGCTTGGGCGTTTGTTGGTTTATCGGTAACCGAGGTGATGACCTCAAGTATTACTGTTGTCATAGGTACAACTTTAAATTACTTTTTAGACGACAAGATCAACAGAGCTGAGATTCTTTTCCCAGGCGTTGCGTGTTTCTTGATTGCTGTTTGTCTTGGTTCGTTGGTGCATGCATCCAATGCCAAAGATAATAAAGTAAAACTTAATAAGTTAGAAGATTCTCACATGGGCGAAAAAGGAATAAAGAGCAATGGAACAAACCCGAATTCAGCGGGAAAGGATTTGGAGCATGGAGCTGGTAAATTAGAGAAAGCTAAAGCGGGGACTGCAACTTTTCTTATTGAGCTTGAGAGCCGAAGATCTATCAAGGTATTCGGGAAAAGCACTTTGATTGGTTTAGCCATATGTTTGTTTGCCGGAGTTTGTTTCTCTCTCTTCTCACCAGCATTTAATCTTGCAACCAATGACCAATGGCATACATTGGACGATGGCGTTCCTCGCTTAAGTGTCTACACAGCCTTTTTCTACTTTTCTTGCTCGTGTTTTGTGGTTGCCGTCATTTTGAACATTACATTCCTTTACCGTCCTGCATTCAACTTGCCACGGTCTTCAATCAAGGCATATTTGAACGACTGGGATGGTCGTGGTTGGGCATTTTTGGCTGGTTTTTTGTGTGGTTTTGGGAATGGTCTCCAGTTTATGGGAGGCCAAGCCGCTGGTTATGCTGCAGCTGATGCAGTCCAGGCACTTCCACTTGTGAGTACTTTTTGGGGTGTGCTCTTTTTTGGTGAATACCGCAAATCGTCCAAGAGAACATATGTGTTACTTGTAGGCATGCTATCAATGTTTATTGTGGCTATTGGAGTACTAATGGCTTCAGCTGGCCATCGGAAACACTAG 1212 42.74 MYVVDSRGGAIACMLLALFFLGTWPAILTLLERRGRLPQHTYLDYTITNLLAAVIIAFTFGEFGHKNDGKPNFLVQLSQNNWPSVLFAMAGGVVLSLGNLSTQYAWAFVGLSVTEVMTSSITVVIGTTLNYFLDDKINRAEILFPGVACFLIAVCLGSLVHASNAKDNKVKLNKLEDSHMGEKGIKSNGTNPNSAGKDLEHGAGKLEKAKAGTATFLIELESRRSIKVFGKSTLIGLAICLFAGVCFSLFSPAFNLATNDQWHTLDDGVPRLSVYTAFFYFSCSCFVVAVILNITFLYRPAFNLPRSSIKAYLNDWDGRGWAFLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGVLFFGEYRKSSKRTYVLLVGMLSMFIVAIGVLMASAGHRKH 403
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca1g02969 403 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 1 402 IPR030189 GO:0005274(PANTHER)|GO:0015505(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0071705(InterPro)
Soca1g02969 403 Pfam Ureide permease 41 397 IPR009834 GO:0016020(InterPro)|GO:0071705(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca1g02969 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr1:33149806 Soca1g02969 Soca-Chr1:33149806 tandem