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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca1g02983 ATGGCTCTTTTGGAATCAAACAAAAACAGAGGCGAGGTAAGGATTCATGAAAGTTTGGATGAACTTAGCACAGATTTGGCTGATTATGTTGCGGAATTATCCGAAGCATCTGTTAAAGAACGTGGCGTTTTCGCCATTGCTTTGTCTGGTGGTTCACTCATTACCTTATTGAGGAATTTGTGTGGAGCTCCATACAACAAAACTGTGGATTGGTCGAAATGGTATATATTTTGGGCTGATGAACGCGTGGTTGCGAAGAATCATGCTGATAGCAACTATAAGCTGGCTAAAGACCATCTTTTGTCTAAGTTGCCTATTGTTCCGAGCCATGTACATTCTATCAACGATTCTCTCACTGCAGAAGAGGCTGCTAACGAATACGAGTTTGTGATCAGACAACTGGTCAGAACCCGTGTGGTGAACGTGTCTGACATCAGCGACTGCCCGAAGTTTGACCTAATCCTACTTGGTATGGGCCCGGATGGCCATGTGGCATCTTTGTTCCCTAACCATTTGGTTCTCGAAGAAAAGAATGAATGGGTGACATTTATCACCACCTCCCCGAAGCCACCGCCCGAAAGAATCACATTCACACTGCCAGTTATCAACTCTGCAGCCAATGTAGCAATAGTCGTGACAGGTGCTGGAAAAGCGGAAGCAGCCCGTTTGGCAATAGACGATGTGGGACCCGAGTGCCCAATTTTGCCAGCTAGGATGATTGAACCAGATGTAGGGAAACTGGTGTGGTTCTTGGATAACCAGGCCGGGTCAAAGCTTAAGGGCTTTTCTCAATTTTCTAAGTAG 804 45.77 MALLESNKNRGEVRIHESLDELSTDLADYVAELSEASVKERGVFAIALSGGSLITLLRNLCGAPYNKTVDWSKWYIFWADERVVAKNHADSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDISDCPKFDLILLGMGPDGHVASLFPNHLVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAIVVTGAGKAEAARLAIDDVGPECPILPARMIEPDVGKLVWFLDNQAGSKLKGFSQFSK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca1g02983 267 Gene3D - 8 262 - -
Soca1g02983 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Soca1g02983 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Soca1g02983 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
Soca1g02983 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Soca1g02983 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 260 IPR039104 -
Soca1g02983 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Soca1g02983 267 Coils Coil 19 39 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca1g02983 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
154854 Soca1g02983 Soca9g01950
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5162432 Soca Soca1g05312 Soca-Chr1:68127309 Soca1g02983 Soca-Chr1:33269171
5163247 Soca Soca2g01790 Soca-Chr2:32747798 Soca1g02983 Soca-Chr1:33269171
5174199 Soca Soca1g02983 Soca-Chr1:33269171 Soca9g01950 Soca-Chr9:21939923