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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca4g03392 ATGGGGCGGGGGAAAGTTGAACTGAAACGGATCGCAGATAAAAGCAGCCGTCAAGTCTCGTTCTCGAAACGAAGGAATGGATTGATGAAGAAAGCTCATGAGCTGGCTGTCCTTTGCGAGGTTGATCTCGCTCTTTTTGTTTTCTCCGGGAAGAATCGCCTGTTTGAGTATTCCACCGGTGACAGCATGAACAAGATTCTCACTCGCTACCAAGGCTACAAAAATGCAGATGAAATCGTCCGCAGAACCGTACAAGAGAAGCTTGCGCTAGAGTGTAACAACGTATGGACCGCTGATAAGTTAATGCAGATCACCCAAGGCCACCTCGAAGAGCACAAGATCCAACAGTCAGATATCAGTGAGCTGTGTCAGTTAGAGAAAGATATCGAGAGCATGATCCAGCTAGTGAGAATCAAAAAGGTAATCTTCCAGTTCAATAAGTTGGTCAATTTGGAACACTGGGATCTAAATACATGGTCATAG 483 45.55 MGRGKVELKRIADKSSRQVSFSKRRNGLMKKAHELAVLCEVDLALFVFSGKNRLFEYSTGDSMNKILTRYQGYKNADEIVRRTVQEKLALECNNVWTADKLMQITQGHLEEHKIQQSDISELCQLEKDIESMIQLVRIKKVIFQFNKLVNLEHWDLNTWS 160
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca4g03392 160 CDD MADS-MEF2-like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Soca4g03392 160 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Soca4g03392 160 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Soca4g03392 160 Gene3D - 13 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Soca4g03392 160 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Soca4g03392 160 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 140 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Soca4g03392 160 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Soca4g03392 160 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Soca4g03392 160 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Soca4g03392 160 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca4g03392 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr4:64330014 Soca4g03392 Soca-Chr4:64330014 dispersed
Soca Soca-Chr4:64330014 Soca4g03397 Soca-Chr4:64354947 dispersed
Soca Soca-Chr4:64330014 Soca4g03392 Soca-Chr4:64330014 tandem
Soca Soca-Chr4:64330014 Soca4g03393 Soca-Chr4:64330014 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Soca2g06148 . 1 245 MADS-box Transcription Factor family AT1G22130 45.85 2.06e-64 205.0
Soca2g06149 . 127 245 MADS-box Transcription Factor family AT1G22130 37.008 1.20e-16 75.1
Soca2g06151 . 127 245 MADS-box Transcription Factor family AT1G22130 37.008 1.66e-16 74.7
Soca2g06150 . 1 116 MADS-box Transcription Factor family AT1G77980 56.034 1.23e-37 128.0
Soca2g06398 . 65 252 MADS-box Transcription Factor family AT2G45650 51.456 1.12e-53 170.0
Soca8g02275 . 1 79 MADS-box Transcription Factor family AT2G45660 55.696 7.06e-22 83.2
Soca8g02277 . 1 223 MADS-box Transcription Factor family AT5G13790 41.841 8.40e-56 178.0
Soca6g01915 . 1 166 MADS-box Transcription Factor family AT5G13790 48.824 1.91e-51 167.0
Soca3g01191 . 13 160 MADS-box Transcription Factor family AT5G60440 39.189 1.54e-30 110.0
Soca3g01190 . 1 196 MADS-box Transcription Factor family AT5G60440 51.777 1.68e-58 184.0
Soca3g01192 . 61 264 MADS-box Transcription Factor family AT2G24840 46.606 6.41e-62 192.0
Soca3g01279 . 45 164 MADS-box Transcription Factor family AT1G29960 36.923 1.67e-18 76.3
Soca9g04715 ACH 1 199 MADS-box Transcription Factor family AT5G65070 40.359 5.50e-37 128.0
Soca1g03314 ACH 1 256 MADS-box Transcription Factor family AT1G69120 54.676 4.29e-93 273.0
Soca5g04261 . 74 146 MADS-box Transcription Factor family AT5G60910 57.534 8.20e-20 81.6
Soca5g04260 . 113 146 MADS-box Transcription Factor family AT5G60910 70.588 2.75e-09 50.1
Soca5g04259 . 113 146 MADS-box Transcription Factor family AT5G60910 70.588 2.75e-09 50.1
Soca5g04345 . 6 183 MADS-box Transcription Factor family AT1G18750 63.483 6.32e-75 239.0
Socaptg000040l_1g00107 . 1 202 MADS-box Transcription Factor family AT5G20240 55.941 6.24e-81 238.0
Socaptg000040l_1g00108 . 1 177 MADS-box Transcription Factor family AT5G20240 57.627 4.49e-73 217.0
Soca4g02642 . 1 59 MADS-box Transcription Factor family AT5G60910 86.441 2.05e-27 107.0
Soca7g04553 . 63 179 MADS-box Transcription Factor family AT1G26310 34.746 3.83e-13 62.8
Soca7g04551 . 62 170 MADS-box Transcription Factor family AT3G57230 33.028 1.97e-13 62.4
Soca7g04552 . 62 173 MADS-box Transcription Factor family AT3G57230 33.036 1.72e-14 65.5
Soca7g04216 . 1 238 MADS-box Transcription Factor family AT2G22540 44.77 4.35e-60 187.0
Soca4g04497 . 1 137 MADS-box Transcription Factor family AT5G55690 34.722 1.01e-23 96.3
Soca4g04441 ACH 1 244 MADS-box Transcription Factor family AT1G24260 73.622 1.20e-117 335.0
Soca6g01598 . 1 189 MADS-box Transcription Factor family AT5G55690 27.273 1.95e-15 72.4
Soca5g01489 ACH 77 252 MADS-box Transcription Factor family AT4G18960 62.431 4.89e-69 209.0
Soca5g01322 . 9 168 MADS-box Transcription Factor family AT1G29960 50.625 2.31e-56 173.0
Soca5g01323 . 9 168 MADS-box Transcription Factor family AT1G29960 50.625 2.31e-56 173.0
Soca6g04152 . 1 242 MADS-box Transcription Factor family AT1G24260 60.408 8.14e-94 274.0
Soca4g02306 . 64 247 MADS-box Transcription Factor family AT5G23260 38.776 1.29e-28 105.0
Soca4g02639 . 113 179 MADS-box Transcription Factor family AT1G69120 59.701 1.86e-19 79.7
Soca4g02641 . 112 157 MADS-box Transcription Factor family AT5G60910 60.87 2.78e-12 56.6
Soca4g02640 . 113 172 MADS-box Transcription Factor family AT1G69120 60.0 7.02e-18 73.2
Soca4g02638 . 112 157 MADS-box Transcription Factor family AT5G60910 60.87 2.78e-12 56.6
Soca4g02356 . 42 219 MADS-box Transcription Factor family AT1G77950 34.921 4.61e-23 93.2
Soca4g02397 . 62 230 MADS-box Transcription Factor family AT4G09960 55.03 1.57e-53 167.0
Soca4g02561 ACH 1 231 MADS-box Transcription Factor family AT3G54340 53.165 7.71e-85 250.0
Soca3g02742 . 1 240 MADS-box Transcription Factor family AT2G22540 57.5 7.15e-90 263.0
Soca6g02761 . 47 157 MADS-box Transcription Factor family AT1G29960 34.586 1.97e-16 74.7
Soca6g02550 ACH 63 236 MADS-box Transcription Factor family AT5G60910 45.556 9.22e-43 141.0
Soca6g02549 . 1 251 MADS-box Transcription Factor family AT5G15800 60.156 5.55e-96 280.0
Soca1g02810 ACH 62 243 MADS-box Transcription Factor family AT1G24260 59.391 2.72e-67 204.0
Soca1g02811 . 62 243 MADS-box Transcription Factor family AT1G24260 60.622 1.48e-69 210.0
Soca1g02349 . 3 78 MADS-box Transcription Factor family AT5G60440 61.842 1.04e-28 106.0
Soca1g03503 . 1 256 MADS-box Transcription Factor family AT1G69120 59.542 4.17e-102 295.0
Soca7g04108 . 1 238 MADS-box Transcription Factor family AT2G22540 44.77 3.74e-60 187.0
Soca7g04183 ACH 63 236 MADS-box Transcription Factor family AT5G60910 47.159 4.88e-47 152.0
Soca7g02568 . 1 63 MADS-box Transcription Factor family AT4G11880 80.952 2.35e-33 113.0
Soca7g02569 . 1 63 MADS-box Transcription Factor family AT4G11880 80.952 2.35e-33 113.0
Soca7g02566 . 62 205 MADS-box Transcription Factor family AT5G62165 50.0 3.94e-37 124.0
Soca7g02567 . 62 172 MADS-box Transcription Factor family AT5G62165 56.757 1.11e-34 117.0
Soca7g00333 . 3 194 MADS-box Transcription Factor family AT5G60440 38.342 5.67e-36 127.0
Soca9g01188 . 48 164 MADS-box Transcription Factor family AT1G29960 52.991 2.39e-41 132.0
Soca8g05184 . 8 159 MADS-box Transcription Factor family AT1G29960 31.646 8.52e-17 71.6
Soca3g01531 . 1 61 MADS-box Transcription Factor family AT5G60910 63.934 5.78e-25 91.7
Soca3g01534 . 43 164 MADS-box Transcription Factor family AT5G65060 33.071 3.01e-08 48.9
Soca3g01536 . 43 149 MADS-box Transcription Factor family AT5G65060 34.821 4.56e-08 47.4
Soca3g01537 . 125 173 MADS-box Transcription Factor family AT1G69120 44.898 1.58e-06 42.4
Soca3g01375 ACH 3 181 MADS-box Transcription Factor family AT5G60440 37.968 7.08e-36 128.0
Soca3g01532 . 63 173 MADS-box Transcription Factor family AT1G69120 29.73 2.28e-07 46.2
Soca7g01033 . 1 144 MADS-box Transcription Factor family AT5G55690 26.351 5.01e-10 57.8
Soca8g00796 ACH 1 178 MADS-box Transcription Factor family AT5G60440 40.11 3.44e-34 122.0
Soca8g00800 . 3 171 MADS-box Transcription Factor family AT5G60440 40.0 9.31e-31 111.0
Soca7g03675 . 63 211 MADS-box Transcription Factor family AT1G71692 45.638 1.27e-28 102.0
Soca7g03674 . 61 230 MADS-box Transcription Factor family AT4G09960 49.419 1.88e-47 152.0
Soca4g01930 . 106 223 MADS-box Transcription Factor family AT3G57230 48.739 5.18e-31 108.0
Soca4g01932 . 106 157 MADS-box Transcription Factor family AT3G57230 67.308 1.22e-18 74.3
Soca4g01931 . 106 223 MADS-box Transcription Factor family AT3G57230 54.622 8.77e-40 132.0
Soca4g01933 . 106 157 MADS-box Transcription Factor family AT3G57230 67.308 1.22e-18 74.3
Soca4g01934 . 1 60 MADS-box Transcription Factor family AT2G14210 86.667 2.60e-32 110.0
Soca4g01953 ACH 1 238 MADS-box Transcription Factor family AT2G22540 53.659 9.55e-79 235.0
Soca6g00105 . 47 157 MADS-box Transcription Factor family AT1G29960 33.083 7.70e-16 72.8
Soca4g00972 . 57 221 MADS-box Transcription Factor family AT3G54340 38.323 1.20e-30 109.0
Soca4g02739 . 62 308 MADS-box Transcription Factor family AT1G18750 45.914 1.88e-62 201.0
Soca5g00926 . 37 164 MADS-box Transcription Factor family AT1G29960 29.851 3.20e-12 60.5
Soca5g00428 ACH 1 209 MADS-box Transcription Factor family AT2G45660 65.566 2.51e-86 252.0
Soca2g01673 . 37 157 MADS-box Transcription Factor family AT1G29960 30.405 9.63e-12 60.8
Soca4g00489 . 1 71 MADS-box Transcription Factor family AT5G65070 55.128 2.13e-23 87.0
Soca7g01682 ACH 62 238 MADS-box Transcription Factor family AT2G22540 41.53 3.87e-33 116.0
Soca9g00826 . 1 151 MADS-box Transcription Factor family AT5G58890 31.126 6.47e-13 66.2
Soca9g01170 . 13 164 MADS-box Transcription Factor family AT1G29960 49.342 4.57e-52 162.0
Soca9g03128 ACH 2 252 MADS-box Transcription Factor family AT4G18960 69.141 4.97e-120 340.0
Soca9g03126 . 2 252 MADS-box Transcription Factor family AT4G18960 69.141 6.64e-120 341.0
Soca9g03127 . 2 252 MADS-box Transcription Factor family AT4G18960 69.841 1.53e-121 344.0
Soca9g03125 . 2 252 MADS-box Transcription Factor family AT4G18960 68.482 7.39e-119 338.0
Soca7g03081 ACH 63 250 MADS-box Transcription Factor family AT3G02310 51.546 7.92e-61 188.0
Soca7g03410 ACH 62 193 MADS-box Transcription Factor family AT4G37940 48.872 2.45e-32 112.0
Soca7g03409 ACH 62 141 MADS-box Transcription Factor family AT4G37940 64.198 5.56e-30 104.0
Soca7g02990 . 2 148 MADS-box Transcription Factor family AT1G65330 32.0 7.58e-17 73.6
Soca7g03970 ACH 1 231 MADS-box Transcription Factor family AT3G54340 54.077 2.70e-87 256.0
Soca9g02764 ACH 1 209 MADS-box Transcription Factor family AT2G45660 61.033 3.49e-75 224.0
Soca4g04055 . 3 124 MADS-box Transcription Factor family AT5G26650 45.082 9.32e-33 120.0
Soca4g04056 . 6 169 MADS-box Transcription Factor family AT5G48670 41.463 2.97e-40 138.0
Soca4g04054 . 1 258 MADS-box Transcription Factor family AT5G48670 47.674 1.37e-65 205.0
Soca7g01870 . 63 175 MADS-box Transcription Factor family AT2G24840 44.248 1.66e-27 102.0
Soca4g00781 ACH 1 226 MADS-box Transcription Factor family AT4G37940 57.447 1.34e-81 241.0
Soca4g00780 ACH 1 141 MADS-box Transcription Factor family AT3G57230 72.34 1.04e-68 206.0
Socaptg000718l_1g00247 . 1 178 MADS-box Transcription Factor family AT1G69120 71.508 1.70e-89 263.0
Soca9g01779 . 1 137 MADS-box Transcription Factor family AT5G55690 34.028 1.29e-19 84.7
Soca9g01565 . 62 224 MADS-box Transcription Factor family AT4G37940 50.307 4.49e-47 151.0
Soca9g01564 . 96 224 MADS-box Transcription Factor family AT4G37940 47.287 1.76e-30 107.0
Soca9g01563 . 96 224 MADS-box Transcription Factor family AT4G37940 47.287 1.76e-30 107.0
Soca2g01311 . 1 60 MADS-box Transcription Factor family AT4G09960 86.667 1.05e-34 115.0
Soca4g02243 . 59 164 MADS-box Transcription Factor family AT5G65070 34.483 4.45e-09 51.6
Soca4g03393 ACH 1 164 MADS-box Transcription Factor family AT5G65060 40.828 1.72e-41 136.0
Soca4g03395 . 1 77 MADS-box Transcription Factor family AT1G69120 62.338 4.46e-29 103.0
Soca4g03394 . 1 77 MADS-box Transcription Factor family AT1G69120 62.338 4.46e-29 103.0
Soca4g03390 . 1 77 MADS-box Transcription Factor family AT1G69120 62.338 4.46e-29 103.0
Soca4g03389 . 1 77 MADS-box Transcription Factor family AT1G69120 62.338 4.46e-29 103.0
Soca4g03392 . 1 147 MADS-box Transcription Factor family AT5G65050 39.474 8.07e-34 115.0
Soca4g03391 ACH 1 147 MADS-box Transcription Factor family AT5G65050 39.474 8.07e-34 115.0
Soca4g03500 ACH 1 240 MADS-box Transcription Factor family AT2G22540 63.333 1.21e-101 293.0
Soca4g03499 . 1 240 MADS-box Transcription Factor family AT2G22540 60.833 8.25e-95 275.0
Soca4g03397 . 1 164 MADS-box Transcription Factor family AT5G65060 40.828 1.46e-40 134.0
Soca4g03396 . 1 77 MADS-box Transcription Factor family AT1G69120 62.338 4.60e-29 103.0
Soca6g02007 . 1 69 MADS-box Transcription Factor family AT3G57390 75.362 1.64e-31 110.0
Soca3g02626 . 62 240 MADS-box Transcription Factor family AT2G22540 48.603 2.59e-47 152.0
Soca3g01866 . 1 68 MADS-box Transcription Factor family AT5G15800 91.176 3.92e-39 128.0
Soca3g01867 ACH 96 250 MADS-box Transcription Factor family AT3G02310 48.734 8.47e-42 137.0
Soca3g01868 . 63 236 MADS-box Transcription Factor family AT5G60910 43.085 7.72e-46 149.0
Soca1g02312 . 3 182 MADS-box Transcription Factor family AT5G60440 35.556 2.92e-29 108.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Soca SRF-TF 1.5e-21 No_clan TF MADS-M-type