Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca4g03409	ATGCATTACCAAACCGAATCATGGGGTACCTACTTGCCACCCACAACCACCATTAACGACCCATTACACTGTATCGAACGTCTCGCTTCCGAGAACGCGGTGGTCATATTCAGCCTCAGCGGTTGTTGCATGTGCCATGCCATAAAACGTCTGTTTTGTGGCATGGGCGTCAACCCAACCGTCTATGAGCTTGATCAACAACCCTTAGGAAAAGAAATGGAGAAAGCATTAATGAGGGTTCTTGGCACCACCTCACCGGTGCCCGTGGTCTTTGTTGGTGGGAAGCTTGTTGGAGCAATGGATAGAGTTATGGCTTCTCATATTAATGGTACACTTGTTCCTCTACTTAAAGAGGCAGGTGCACTTTGGCTTTAA	375	47.73	MHYQTESWGTYLPPTTTINDPLHCIERLASENAVVIFSLSGCCMCHAIKRLFCGMGVNPTVYELDQQPLGKEMEKALMRVLGTTSPVPVVFVGGKLVGAMDRVMASHINGTLVPLLKEAGALWL	124

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca4g03409	124	PANTHER	GLUTAREDOXIN	25	124	IPR011905	-
	Soca4g03409	124	Pfam	Glutaredoxin	34	97	IPR002109	-
	Soca4g03409	124	Gene3D	Glutaredoxin	18	123	-	-
	Soca4g03409	124	ProSiteProfiles	Glutaredoxin domain profile.	22	123	-	-
	Soca4g03409	124	NCBIfam	glutaredoxin-like family	25	124	IPR011905	-
	Soca4g03409	124	CDD	GRX-GRXh-1-2-like	33	115	-	-
	Soca4g03409	124	FunFam	Glutaredoxin family protein	22	123	-	-
	Soca4g03409	124	SUPERFAMILY	Thioredoxin-like	24	123	IPR036249	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca4g03409	K03676	glutaredoxin 3

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr4:64563925	Soca8g03713	Soca-Chr8:61661741	dispersed
	Soca	Soca-Chr5:15562914	Soca4g03409	Soca-Chr4:64563925	transposed
	Soca	Soca-Chr5:17165211	Soca4g03409	Soca-Chr4:64563925	transposed
	Soca	Soca-Chr4:64563925	Soca4g04426	Soca-Chr4:75480453	wgd

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Soca7g00162	.	33	138	GRX gene family	AT5G14070	39.623	1.83e-17	70.9
	Soca4g04426	.	1	140	GRX gene family	AT5G14070	50.968	1.68e-46	146.0
	Soca5g01438	.	33	140	GRX gene family	AT5G14070	51.852	2.42e-33	112.0
	Soca5g01605	.	20	140	GRX gene family	AT5G14070	36.364	2.14e-26	94.0
	Soca2g04794	.	30	138	GRX gene family	AT5G14070	41.284	1.26e-17	72.4
	Soca3g02251	.	30	132	GRX gene family	AT5G14070	33.01	5.28e-12	57.8
	Soca4g03409	.	1	140	GRX gene family	AT5G14070	59.286	4.22e-50	154.0