AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Soca4g03410 | ATGGCGGATCATGATGCACCTCCGCCAGATACCGCCATCACCGATGATGATCAAAATTCCCAACTTAACAACCATCATTCATCGACGTCTCTTTACGAAAAACTAGATCAATTCACGTCCGAATTATCGTCATGTACCGATCAACCTCCCGAAATTGTGGATTCTGTTCATCACTTTGCTGATCTTTTCGACGTTAAAGTCGTTGAATATGAATCCGGGTCCAAGAAATGGATCGAGGATGAATGTAATTCATTGCTCATCGAATCTGTGGATCGAACCGAAAAGCTGTTGAAATCATTTTCTAGATTTCATGCAGACGAAAACTTCGCGAATGTTGTAAACCGGATCAGCGGTATACAACAACGTGCATTGTCGATAATGGAGGTTGAGTTTAAGATGATTCTCGACGATTATCAAACATCGTACGAGAGAGAACAGAAAAGCATTACTGAGGAGGAGCAGGCGAAGACGAAACAGAAACAGTTGTCACCTTCTCCTAGCAATGTTAAGGAAACGGCTGAACAGGCAGAAATTAGTGAGAATCAATCGGAACCGGAAGATCAGAAGGACGAGTTTCTAGGTTATTCAGATGAGATGGTATCGAATCTGAATAAGCTAGCTAAAGGATTGATAGAAGGCGGTCATGAAACCGAGTGTAACGAATTGTATTTTTTCGTTAGAAGAAATGCAATGGAACAGAATTTGAAGCTTTTGCAGTTTGAGAAATTTTCAATCGATGAGATGCAGAAGATGCACTGGGAGCCGATAGAGAAAGAGGTTTCGGCTTGGATGAAGATGTTCAAACATTTTTGTACATCGTTATTGCCTAGTGAGCGGAAACTGGCGGATTCTGTGTTTACTGGCTATACCGCAATCTCGGATAGATTGTTTGGCAGCCTAGCGCAAATTGTTCTGTTTTACTTTCTCAGTTTTGCAGAGGCCGTGATGATGACAAAACGTTCAGCTGAGAAATTGTTTAAGTTTCTAGATATATACGAGACGTTAAGAGATAGTATCTTGGAGGTTGAGAAATTGCTTGCTGATGAATATTTACACCAACTCAAATCCGCAACAGGGTTAATCAATACAATCCTAGGTGAGGCTATTTACAACATCTTTATAGATCTTGAAAACTCAATAAAAGCAGATACTACCAAGACTGCGGTTCCTGGTGGGGCAGTACATCCTTTAACTCGTTACACAATGAATTATTTGAAATATGCTTGCGAGTATAGTGACACATTGGAGCAGATATTTAAAGAGCATAAAAAGGTAGATCGGGCCGAATCAGCAACAGGTGATGAAGATGCTAGCTCTCAAGAACAAGCACAGAACCAGGGGAATCAAACAGAACTTGAATCGCCATTCCAGTCGCAATTAGCCAAAATCATGGATTTGTTGGATACAAATCTAGAAGCCAAGTCAAGGTTGTATAAGGATCCATCGTTGAGCTTGATCTTTATGATGAATAACGGGCGGTATATACTTCAGAAGACAAAGGGGACAGGAGAAATGAGGACATTGATGGGAGATCCATGGGTGAGGAAACGATCATCAGATTTAAGGAGTTACCACACGAATTACAAGCGAGAAACATGGACAAAGCTGTTGCAATGTTTGAGTCATGAAGGATTAAGCGTTAATGGGAAAGTGATGAAGCCAGTGCTTAAAGAAAGGTTCAAGAGTTTTAACGCTATGTTTGATGATATACACAGAACACAAACTACTTGGGTAGTGAGCGATGAACAGCTTCAATCAGAACTAAGGGTGTCCATATCAGCAATTGTGATTCCGGCTTATAGGTCATTCATGGGGAGGTTCAGTCAAGTGTTTACTCCAGGAAGGCAAACCGAGAAGTACATAAAGTATCAGCCAGAAGATATAGAAACATGTATCGAAGAGCTTTTTGATGGAAGTGCAGCTCAGCAAAGCAAGAAGAGATAA | 1944 | 40.84 | MADHDAPPPDTAITDDDQNSQLNNHHSSTSLYEKLDQFTSELSSCTDQPPEIVDSVHHFADLFDVKVVEYESGSKKWIEDECNSLLIESVDRTEKLLKSFSRFHADENFANVVNRISGIQQRALSIMEVEFKMILDDYQTSYEREQKSITEEEQAKTKQKQLSPSPSNVKETAEQAEISENQSEPEDQKDEFLGYSDEMVSNLNKLAKGLIEGGHETECNELYFFVRRNAMEQNLKLLQFEKFSIDEMQKMHWEPIEKEVSAWMKMFKHFCTSLLPSERKLADSVFTGYTAISDRLFGSLAQIVLFYFLSFAEAVMMTKRSAEKLFKFLDIYETLRDSILEVEKLLADEYLHQLKSATGLINTILGEAIYNIFIDLENSIKADTTKTAVPGGAVHPLTRYTMNYLKYACEYSDTLEQIFKEHKKVDRAESATGDEDASSQEQAQNQGNQTELESPFQSQLAKIMDLLDTNLEAKSRLYKDPSLSLIFMMNNGRYILQKTKGTGEMRTLMGDPWVRKRSSDLRSYHTNYKRETWTKLLQCLSHEGLSVNGKVMKPVLKERFKSFNAMFDDIHRTQTTWVVSDEQLQSELRVSISAIVIPAYRSFMGRFSQVFTPGRQTEKYIKYQPEDIETCIEELFDGSAAQQSKKR | 647 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Soca4g03410 | 647 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Soca4g03410 | 647 | MobiDBLite | consensus disorder prediction | 145 | 188 | - | - | |
| Soca4g03410 | 647 | SUPERFAMILY | Cullin repeat-like | 86 | 637 | IPR016159 | - | |
| Soca4g03410 | 647 | MobiDBLite | consensus disorder prediction | 426 | 454 | - | - | |
| Soca4g03410 | 647 | MobiDBLite | consensus disorder prediction | 435 | 454 | - | - | |
| Soca4g03410 | 647 | Coils | Coil | 135 | 155 | - | - | |
| Soca4g03410 | 647 | Gene3D | Exocyst complex component Exo70 | 63 | 646 | - | - | |
| Soca4g03410 | 647 | MobiDBLite | consensus disorder prediction | 159 | 179 | - | - | |
| Soca4g03410 | 647 | Pfam | Exo70 exocyst complex subunit C-terminal | 262 | 634 | IPR046364 | GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro) | |
| Soca4g03410 | 647 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 83 | 639 | IPR004140 | GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Soca4g03410 | K07195 | exocyst complex component 7 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 156608 | Soca4g03410 | Soca9g04735 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Soca | Soca-Chr1:31252099 | Soca4g03410 | Soca-Chr4:64598633 | dispersed | |
| Soca | Soca-Chr4:64598633 | Soca6g01456 | Soca-Chr6:19458950 | dispersed | |
| Soca | Soca-Chr4:64598633 | Soca9g04735 | Soca-Chr9:66749841 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Soca3g01069 | . | 12 | 355 | EXO70 exocyst subunit family | AT2G39380 | 41.499 | 2.70e-73 | 236.0 | |
| Soca9g04735 | ACH | 53 | 653 | EXO70 exocyst subunit family | AT5G13150 | 45.86 | 1.38e-176 | 516.0 | |
| Soca7g05059 | ACH | 18 | 633 | EXO70 exocyst subunit family | AT1G72470 | 59.752 | 0.0 | 749.0 | |
| Soca7g04515 | ACH | 24 | 682 | EXO70 exocyst subunit family | AT5G50380 | 55.457 | 0.0 | 714.0 | |
| Soca7g05110 | ACH | 12 | 685 | EXO70 exocyst subunit family | AT4G31540 | 44.863 | 0.0 | 560.0 | |
| Soca1g00731 | . | 7 | 631 | EXO70 exocyst subunit family | AT5G52340 | 71.04 | 0.0 | 952.0 | |
| Soca6g01456 | ACH | 1 | 624 | EXO70 exocyst subunit family | AT5G58430 | 59.282 | 0.0 | 743.0 | |
| Soca2g00146 | . | 68 | 654 | EXO70 exocyst subunit family | AT3G29400 | 45.455 | 4.06e-159 | 494.0 | |
| Soca2g00144 | . | 68 | 654 | EXO70 exocyst subunit family | AT3G29400 | 45.455 | 5.48e-158 | 493.0 | |
| Soca2g00147 | . | 68 | 654 | EXO70 exocyst subunit family | AT3G29400 | 45.455 | 5.93e-168 | 496.0 | |
| Soca1g02837 | ACH | 80 | 644 | EXO70 exocyst subunit family | AT5G13150 | 43.151 | 1.26e-152 | 453.0 | |
| Soca6g03189 | . | 15 | 636 | EXO70 exocyst subunit family | AT4G31540 | 28.811 | 1.49e-77 | 260.0 | |
| Soca1g04048 | ACH | 1 | 638 | EXO70 exocyst subunit family | AT5G03540 | 79.257 | 0.0 | 1014.0 | |
| Soca8g04801 | . | 13 | 611 | EXO70 exocyst subunit family | AT2G39380 | 48.595 | 0.0 | 556.0 | |
| Soca8g04605 | ACH | 1 | 622 | EXO70 exocyst subunit family | AT5G58430 | 52.739 | 0.0 | 653.0 | |
| Soca3g00267 | . | 43 | 608 | EXO70 exocyst subunit family | AT3G09520 | 51.658 | 0.0 | 571.0 | |
| Soca6g03271 | . | 15 | 636 | EXO70 exocyst subunit family | AT4G31540 | 28.983 | 1.21e-77 | 261.0 | |
| Socaptg000381l_1g00044 | . | 55 | 483 | EXO70 exocyst subunit family | AT1G72470 | 31.507 | 3.01e-57 | 201.0 | |
| Soca2g05242 | . | 11 | 676 | EXO70 exocyst subunit family | AT4G31540 | 69.67 | 0.0 | 953.0 | |
| Soca4g02956 | ACH | 24 | 683 | EXO70 exocyst subunit family | AT5G50380 | 54.391 | 0.0 | 705.0 | |
| Soca6g03527 | ACH | 25 | 633 | EXO70 exocyst subunit family | AT1G72470 | 63.275 | 0.0 | 757.0 | |
| Soca2g05048 | . | 11 | 676 | EXO70 exocyst subunit family | AT4G31540 | 69.67 | 0.0 | 953.0 | |
| Soca7g03033 | . | 1 | 658 | EXO70 exocyst subunit family | AT3G29400 | 47.923 | 0.0 | 566.0 | |
| Soca7g02937 | . | 7 | 632 | EXO70 exocyst subunit family | AT5G03540 | 73.768 | 0.0 | 931.0 | |
| Soca7g02934 | ACH | 217 | 632 | EXO70 exocyst subunit family | AT5G03540 | 81.01 | 0.0 | 692.0 | |
| Soca7g02935 | ACH | 217 | 520 | EXO70 exocyst subunit family | AT5G03540 | 83.553 | 0.0 | 540.0 | |
| Soca7g02936 | . | 217 | 520 | EXO70 exocyst subunit family | AT5G03540 | 83.553 | 0.0 | 540.0 | |
| Socaptg000718l_1g00230 | . | 5 | 658 | EXO70 exocyst subunit family | AT3G29400 | 50.226 | 0.0 | 602.0 | |
| Soca1g00794 | . | 6 | 631 | EXO70 exocyst subunit family | AT5G52340 | 70.927 | 0.0 | 952.0 | |
| Soca4g03410 | ACH | 79 | 687 | EXO70 exocyst subunit family | AT5G13990 | 48.038 | 0.0 | 551.0 | |
| Soca3g00148 | . | 32 | 608 | EXO70 exocyst subunit family | AT3G09520 | 50.856 | 0.0 | 569.0 |