AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca4g03415 ATGGCTGCTGTCAAGGCTGCTATACATGTTTCCGACATGCCACATTTTGACCAAGTCAACGACAACTCCGCCGCCTCGTTGTCTCTTTATGCCACCCGTCTTCCTACTACTGGATTGGATATGAGCAATGGCCGGAAAGTTATGCCAAAATTTATGGTGGTGGGTCACCGTGGTCATGGTATGAATGTGTTACAGTCAACTGATAAGAGAATGAAAGCTTATAAAGAGAATTCAATTCTTTCCTTCAATAACGCTGCTAATCACCCACTTGATTACATTGAATTTGATGTTCAGGTGACAAAAGACGACACGCCGGTCATTTTCCATGACGATTTCATCCTCTCTGAAGAAAATGGTACCGTAATTGAAAAGAGGATCACTGAGTTGACTTTGGATGAATTCTTTAGCTATGGTCCTCAGAGAGAAACAGGCCAGGTTGGCAAATCTTTGCTGAGAAAATCCAATGGAAATATTGTCGGTTGGGACGTTGAGATCGATGATCATTTTTGTACTCTTGAAGAATCATTCAAAAAAGTAAACCCTATTTTGGGATTCAACATTGAATTGAAATTCGATGATTACGTTGTTTATGAACAAGAGTATCTCGTTCATGTTCTTCAAGTCATTTTGAAGGTGGTATACGAAAACGCCCAAGAAAGACCCATAATCTTTTCAACTTTCCAGCCTGATGTCGCCTTGCTAATGAAGAAACTTCAGCATACATACCCGGTGTACTTCTTGACGAACGGAGGAAACGAGATATTCAATGATGTGAGAATGAATTCATTAGAAGAAGCTAAAAAGCTGGCATTGGAAGGTGGATTGGATGGCATTGTTTCAGAAGTAAAGGGTATTTTTAGAAACCCTTCGGTAGTAAGAGAGATTAACGAGTCTAATCTCTCCCTACTTACTTATGGCAAATTAAATAATGTCCCTGAAGCCGTACATGTTCAATATCTTATGGGCGTCGAGGGCGTGATTGTTGATTTAGTACAAGAAATCACAAGCGCAGTCAAAGCATATAGTGATAGCAACAAGAAGACTATAATAGAAGGGGAGGAAGGAGGATTACAAGTGAAGGAGAAAACCGATAAGATTGAATTGTCGTTTCTGCTGAGCTTGATCTCACAAGTTATTCAGCATTGA 1146 40.05 MAAVKAAIHVSDMPHFDQVNDNSAASLSLYATRLPTTGLDMSNGRKVMPKFMVVGHRGHGMNVLQSTDKRMKAYKENSILSFNNAANHPLDYIEFDVQVTKDDTPVIFHDDFILSEENGTVIEKRITELTLDEFFSYGPQRETGQVGKSLLRKSNGNIVGWDVEIDDHFCTLEESFKKVNPILGFNIELKFDDYVVYEQEYLVHVLQVILKVVYENAQERPIIFSTFQPDVALLMKKLQHTYPVYFLTNGGNEIFNDVRMNSLEEAKKLALEGGLDGIVSEVKGIFRNPSVVREINESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITSAVKAYSDSNKKTIIEGEEGGLQVKEKTDKIELSFLLSLISQVIQH 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca4g03415 381 Gene3D Phosphatidylinositol (PI) phosphodiesterase 43 339 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Soca4g03415 381 FunFam Glycerophosphodiester phosphodiesterase GDPD2 42 340 - -
Soca4g03415 381 Pfam Glycerophosphoryl diester phosphodiesterase family 56 331 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Soca4g03415 381 ProSiteProfiles GP-PDE domain profile. 51 338 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Soca4g03415 381 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 40 345 IPR051578 GO:0046475(PANTHER)
Soca4g03415 381 SUPERFAMILY PLC-like phosphodiesterases 49 332 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca4g03415 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Event-related genes

Select Gene_1 Gene_2 Event_name
156053 Soca3g01523 Soca4g03415
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr4:64629285 Soca4g04424 Soca-Chr4:75439534 dispersed
Soca Soca-Chr3:15114279 Soca4g03415 Soca-Chr4:64629285 wgd
Soca Soca-Chr4:64629285 Soca4g04423 Soca-Chr4:75439534 wgd