AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca4g03419 ATGGGGTGTGCAGTTTCTGTGTATAGAGTTGGAGGTGGCAATAAGAAGCCAATGAAGATCCCTTTAGTAATTATACTTGTTCCTTCTTCTATTCGTGCTCCTACCAATACTACTAATATTTCAAAACCACTTAAACCCCTTGTTCCTAAGGATCTCCTTCATCGTCTTACTTCTTTTAGAAATCAAATCGCTCTTCTTGCCCAACAAACTGCAGATGTATCAGCTGTTCCTGAATTGCTACGCGCATCGGAGGAATATCTGTCTCTATTGGTTGGCCTTACTGATCAAGAGCTTGGGTTTCGAGAACTCATTGAATTCAAATGGAAAAGTATAGACGATGGACGACAAGAAGTATGTGTTGCGGATTCATGGTTTGAATTACTATCTGTTGTTCATATGATGGCTATGTTGACGTTAATGGAGGCAAATTCAATGTTGATTCCTGATCAGACTGTTTCCACTGAAACAGTCGAATCTACAGATAACATAAGGTGTGCAGTGGACTTATTGGTAAAAGCAGCCGGGTACTTGCAATTCTGTCTTCGAGAAATTCTTGTCCAAATTCCACCTCATATAAGGATGAAGCTACCAGTAGATTTGCAGGAGAATGTAATAGAGGCTGCTTATATTCAAGTACTCGGGCAGGGAACAGAAATGCAGCTTGCTTCAGCAGTTGAAAGTAAAAATGCCACTTTATCCGTTAAGAGAAGACTAGCATGTGAACAATTAAGTTATTTCGGACAGGCTCATTACTGCTTGTCAACATGTGAGAACCTTAATGGATATGGAAAGAAACATTTGTCATTTATCAAATGGAAGTACCTTGAAGCAAAGGCTGCAGCATATTATTACCATGGTCTGATCACAGACAAGGGTACCGAACCTTCCTGCCATATCAGTGCAGTTTGTTGTTTTCTAGCAGCTGAAGAGATTCTAACAGAGAGCAAGAAGGCCTGCTTAAAATTTTGCCTAACACTTCCCATTACAAGGGCTCCGGCTGCGTGGGGTGCCATGAAGCATTTAAACAAGAAAATTCCAGAAACCGCAGCTAAAAAGTCTCAGATGTACGCTTACCTTTTAGAGGAAGAAAAGAGTTTGGACGTGTTACCGGACCTGCCTGAGTTTGAGTTGTCATTAAAAGCAGACGAGTATAAATTGCCAGATAAAGATGCATCATGGGAGAATGAAAAATGGATAATGCCTAATCAGACACTTAAAACTCACTTAACAGACGATGAAGAAGATGACAACTGA 1254 40.43 MGCAVSVYRVGGGNKKPMKIPLVIILVPSSIRAPTNTTNISKPLKPLVPKDLLHRLTSFRNQIALLAQQTADVSAVPELLRASEEYLSLLVGLTDQELGFRELIEFKWKSIDDGRQEVCVADSWFELLSVVHMMAMLTLMEANSMLIPDQTVSTETVESTDNIRCAVDLLVKAAGYLQFCLREILVQIPPHIRMKLPVDLQENVIEAAYIQVLGQGTEMQLASAVESKNATLSVKRRLACEQLSYFGQAHYCLSTCENLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGTEPSCHISAVCCFLAAEEILTESKKACLKFCLTLPITRAPAAWGAMKHLNKKIPETAAKKSQMYAYLLEEEKSLDVLPDLPEFELSLKADEYKLPDKDASWENEKWIMPNQTLKTHLTDDEEDDN 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca4g03419 417 ProSiteProfiles BRO1 domain profile. 23 417 IPR004328 -
Soca4g03419 417 SMART BRO1-2 29 403 IPR004328 -
Soca4g03419 417 PANTHER UNCHARACTERIZED 15 406 IPR038898 -
Soca4g03419 417 Gene3D alix-aip1 like domains 41 400 IPR038499 -
Soca4g03419 417 CDD BRO1-Alix-like 23 380 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca4g03419 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr3:75878318 Soca4g03419 Soca-Chr4:64663766 dispersed