AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca4g03440 ATGGCAACACAATACCATTTATCAAACATAGCTTTGCAATCACAAACATTGTGCTCCAAACAGCAGCTCAGTTTCGGTCCCTCTGTCGGATCTTGTAGGCCGGTTTCGGGTAATAAGGGAAAAGGGTGTTTGAGGGTTGTTTGTAATGCTCGAAAGGTTGTTGATGTTTTAACTAGAAGTGAACCCGAAAGCCGAGATTTAGAAAAGTTAAACAAACAGTTATCATGTGTGATGAAGTTTGGTGGATCGTCTGTCGCGTCTGCAGAGCGAATGAAAGAAGTGGCCGATCTTATTCTTAGTTTTCCGGAGGAGAGTCCGGTTATTGTTTTGTCTGCCATGGGCAAGACCACCAACAAGCTTATTGCGGCTGGAGAGAAGGCTGCGAGTTGTGTCTCCGATGTGTCAAAAATTGAAGAATTGAACTTTGTGAGAGAACTACATTATAGGACAGTGGACGAGCTTGGATTAGAGAAAACACTTGTTATAGACCACTTGGTAGAATTAGAGCGGCTTTTAAACGGGATTGCTGTACTAAAGGAGTTTACTCCACGTGCAAGAGACTATCTAGTCTCATTCGGGGAGTGCATGTCTACAAGGATTTTTGCAGCATACTTGAATAAAATTGGTGCCAAAGCGCGCCAATATGATGCGTTTGACATCGGATTCATAACAACAGATGACTTTACTAACGCGGATATATTGGAAGCAACTTATCCAGCTGTAGCAAAGAGACTAAATGGTGACTGGGTTAAAGATCCCGCCATCCCTATTGTCACGGGTTTCCTTGGAAAGGGTTGGAGAACTTGCGCTATAACTACATTGGGCAGAGGTGGTAGTGATTTGACTGCCACTACCATTGGTAAAGCACTTGGCTTGCGGGAAATTCAGGTATGGAAAGATGTGGATGGTGTATTGACATGCGACCCTAATATATACTCGGGTGCAGAACCTGTGCCGTATTTGACTTTCGATGAGGCAGCAGAACTTGCATATTTTGGTGCTCAGGTCCTACATCCACAGTCTATGAGGCCTGCAAGAGAGGGTGATATACCTGTTAGGGTTAAAAATTCTTACAACCCTAATGCTCCGGGTACCCTAATCACTAAATCAAGAGATATGAGCAAGGCAGTACTAACCAGCATTGTTTTGAAACGAAATGTTACCATGTTAGACATTGTTAGCACTCGCATGCTTGGTCAATTTGGATTCCTTGCCAAGGTGTTTTCAATTTTTGAGGATCTGGGTATCTCGGTGGATGTTGTAGCTACAAGTGAAGTTAGCATTTCATTAACGTTAGATCCTTCAAAACTTTGGAGCAGGGAGTTGATTCAGCAGGCAAGCGAACTTGATCATGTTGTTGAAGAACTAGAAAAAATTGCTAAAGTGAATCTCCTACAGCACAGATCTATAATTTCGCTCATTGGAAATGTTCAGAGGTCCTCACTTGTATTGGAGAAGGCATTCCGTGTTCTTCGTGTGAACGGAGTGAATGTCCAAATGATTTCACAAGGAGCATCAAAGGTGAATATATCACTGATAGTAAATGACAGTGAATCAGAAAAATGCGTGAAAGCTCTACATTCAGCCTTCTTTGAGAGTGAGATGTCGGATCTTGACTGA 1620 42.65 MATQYHLSNIALQSQTLCSKQQLSFGPSVGSCRPVSGNKGKGCLRVVCNARKVVDVLTRSEPESRDLEKLNKQLSCVMKFGGSSVASAERMKEVADLILSFPEESPVIVLSAMGKTTNKLIAAGEKAASCVSDVSKIEELNFVRELHYRTVDELGLEKTLVIDHLVELERLLNGIAVLKEFTPRARDYLVSFGECMSTRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLNGDWVKDPAIPIVTGFLGKGWRTCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYSGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLRVNGVNVQMISQGASKVNISLIVNDSESEKCVKALHSAFFESEMSDLD 539
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca4g03440 539 ProSitePatterns Aspartokinase signature. 77 85 IPR018042 GO:0004072(InterPro)|GO:0008652(InterPro)
Soca4g03440 539 CDD AAK-AK-LysC-like 76 368 IPR041746 -
Soca4g03440 539 Gene3D - 77 367 IPR036393 -
Soca4g03440 539 SUPERFAMILY Carbamate kinase-like 77 370 IPR036393 -
Soca4g03440 539 FunFam Aspartokinase 388 461 - -
Soca4g03440 539 Gene3D - 388 465 - -
Soca4g03440 539 ProSiteProfiles ACT domain profile. 392 472 IPR002912 -
Soca4g03440 539 FunFam Aspartokinase 1 462 531 - -
Soca4g03440 539 NCBIfam aspartate kinase 77 532 IPR001341 GO:0004072(InterPro)|GO:0008652(InterPro)
Soca4g03440 539 Gene3D Aspartokinase, catalytic domain 114 209 IPR042199 -
Soca4g03440 539 PANTHER ASPARTATE KINASE 73 532 - GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER)
Soca4g03440 539 FunFam Aspartokinase 114 209 - -
Soca4g03440 539 Pfam Amino acid kinase family 76 356 IPR001048 -
Soca4g03440 539 Coils Coil 439 459 - -
Soca4g03440 539 FunFam Aspartokinase 185 367 - -
Soca4g03440 539 SUPERFAMILY ACT-like 459 533 IPR045865 -
Soca4g03440 539 SUPERFAMILY ACT-like 376 476 IPR045865 -
Soca4g03440 539 Gene3D - 379 531 - -
Soca4g03440 539 Pfam ACT domain 471 530 IPR054352 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca4g03440 K00928 aspartate kinase [EC:2.7.2.4]
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Event-related genes

Select Gene_1 Gene_2 Event_name
156045 Soca3g01509 Soca4g03440
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr2:66035976 Soca4g03440 Soca-Chr4:64981991 dispersed
Soca Soca-Chr4:64981991 Soca8g03618 Soca-Chr8:60492074 dispersed
Soca Soca-Chr4:64981991 Soca4g03440 Soca-Chr4:64981991 tandem
Soca Soca-Chr4:64981991 Soca4g03441 Soca-Chr4:64981991 tandem