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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca4g03447 ATGTTGAGGGCCGGAAGCAGGAGGCTAGCGGCTTCTCTTACAACCCCGTCATGGATCCATAAAAGCTCCCCCTCATCTGTCTCCGTATTCACCAATCAGATCGATGACTCCCCTTCCTCCGCCGCCCCCGCCAGTCACGATCTTCGATCTATCTACGCCTCTTCTCTTTTCAACCCTAATTTCCATCTTTTGTCTCGAGGATTTGCTTCAAACTCGATAACCCCAAATTATGAGGACAGAATTTCACCAACACTGACGGCCATCACTAACCCGACTTCAAAGATAGTATATGATGAGCATAACCATGAGCGTTACCCACCTGGTGATCCAAGCAAACGAGCATTTGCATATTTTGTCTTGACAGGTGGAAGGTTTGTGTACGCTTCCTTGATTCGGCTTTTGGTGCTCAAATTTGTTCTCAGCATGTCTGCCAGTAAAGATGTTCTTGCACTCGCTTCTCTCGAGGTCGATCTTTCTAGCATTGAACCCGGGACCACTGTGACAGTTAAGTGGCGTGGAAAGCCTGTGTTCATCAGGCGCCGAACAGAGGATGATATAAAGCTAGCAAACAGTGTTGATGTTGCAACTCTTCGTGACCCACAAGAGGATGCTGCCAGGGTCAAGAACCCTGAATGGCTAGTTGTGGTTGGTGTGTGCACCCATCTAGGTTGCATCCCGCTACCAAATGCTGGGGATTTCGGTGGCTGGTTTTGTCCGTGCCATGGTTCTCATTACGACATATCTGGCAGGATCCGTAAGGGGCCAGCACCCTATAATTTGGAGGTGCCCACTTACAGTTTCTTGGAAGAGAACAAGTTGCTTGTTGGATAA 831 48.74 MLRAGSRRLAASLTTPSWIHKSSPSSVSVFTNQIDDSPSSAAPASHDLRSIYASSLFNPNFHLLSRGFASNSITPNYEDRISPTLTAITNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVATLRDPQEDAARVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLVG 276
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca4g03447 276 Gene3D - 145 276 IPR036922 GO:0051537(InterPro)
Soca4g03447 276 PRINTS Rieske 2Fe-2S subunit signature 248 260 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Soca4g03447 276 PRINTS Rieske 2Fe-2S subunit signature 214 225 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Soca4g03447 276 PRINTS Rieske 2Fe-2S subunit signature 236 248 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Soca4g03447 276 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 186 274 IPR017941 GO:0051537(InterPro)
Soca4g03447 276 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 83 276 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Soca4g03447 276 Pfam Rieske [2Fe-2S] domain 206 261 IPR017941 GO:0051537(InterPro)
Soca4g03447 276 SUPERFAMILY ISP domain 150 270 IPR036922 GO:0051537(InterPro)
Soca4g03447 276 SUPERFAMILY ISP transmembrane anchor 93 149 - -
Soca4g03447 276 Pfam Ubiquinol cytochrome reductase transmembrane region 108 147 IPR004192 GO:0008121(InterPro)
Soca4g03447 276 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 132 276 IPR006317 GO:0008121(InterPro)
Soca4g03447 276 CDD Rieske-cytochrome-bc1 153 276 - -
Soca4g03447 276 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 146 276 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca4g03447 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr4:65033161 Soca4g03447 Soca-Chr4:65033161 tandem