AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca4g03450 ATGGCTACTAATAATTCATCTGCAGGAAGCAAACAGAAAGACAAGAGAGAAGTAATACGATTGGAACGTGAAGCCGTTATTCCAATTTTGAAACCAAGGCTCATCATGACTTTGGCCAACCTCATTGAACAGAGTTCCGACCGGGCAGAGTTCTTGAAGCTCTGCAAGAGAGTTGAGTACATGATTCGAGCATGGTATTTTCTTCAGTTTGAAGATCTTATGCAACTATATGCACTCTTTGATCCTGTTTATGGGGCTCAGAAATTGGAGCAGCAGAACTTATCTTCTCAAGAGGTCGATAATCTTGAACAGAACTTCCTAAACTATATGTTTAAGGTACTTGAAAAGAGTAATTTTAAAGTTATTACCAATGAGGAAATTGAGGTTGCACAATCGGGGCAGTATCTTCTCAATCTTCCTATCTCAGTGGATGAATCAAAGCTTGATAAGAACTTACTGAAGAGGTACTTCAAAGAACATCCTCAAGAAAACCTTCCCGACTTTGCAGATAAGTATATAATCTTCCGACGTGGCATTGGAATTGATCGTACGACTAATTACTTTATCATGGAGAAGATAGACGTACTCATTGCACGTATATGGGCATGGATCATGAGAGTGACTAGGCTGGAAAAGTTTTTTCCTGGAAAAACAAGTAAACCAGTTGAGAAATATATGAAGAAAGATTTGGCCAGAGATGATGAAATCATTGATGAAGAAATAAAGGATGATTTGTATGTTGAGCGGATTCGGTTAGAAAAGTTGAATTTCAGTTTACAGAATTTGTCAAGTAAGATTACAATCCAAGAACCTACATTTGACAGGATTATTGTTGTTTACAGGCTAGCAGGCACAAAAACAAAAAAAGAACGAGGAATCTACGTGAAGCATTTGAAACAGATCCCAATGGCAGATATGGAAATAGTCCTGCCTGAGAAGAAAAACCCGAGTCTGACCCCAATGGACTGGGTGAAATTTCTTACCACTGCTATACTCGGTCTGGCAGCTGCCACTGGTTCAATCGAGACACCTCAAGCTGACTTTTGGGTCATTGTTGCTGTTGTCTCCACAATAGTTGGCTACTGCGCCAAAATATACTTTACGTTTCAGGCGAACATGGAAACATATCAGAACTTAATCACACAATTCATGTATGACAAACAATTGGATAGTGGAAAAGGCACTCTTCTTCATTTGTGTGATGATGTCATTCAACAAGAAGTAAAAGAGGTTATAGTGTCTTTCTTTATATTGATGGAACAGGGGAAAGCAACTCTAAAGGAACTCGACCATAAATGTGAGGAACTACTGAAAGAGGAGTTTGGTGAAAGATGCAACTTTGATGTGGATGATGCAGTTCATAAGTTAGAAAAGCTAGGCATTATTTCTAAGGATCAAATAGGAAGGTATTATTGTGCTGGTCTTAAACGTGCAAATGAGATCATTGGCACCACTACAGAAGAGTTGGTGCTTAAGGCAAGAGAAGAGGGCGGTTCTTAA 1500 39.0 MATNNSSAGSKQKDKREVIRLEREAVIPILKPRLIMTLANLIEQSSDRAEFLKLCKRVEYMIRAWYFLQFEDLMQLYALFDPVYGAQKLEQQNLSSQEVDNLEQNFLNYMFKVLEKSNFKVITNEEIEVAQSGQYLLNLPISVDESKLDKNLLKRYFKEHPQENLPDFADKYIIFRRGIGIDRTTNYFIMEKIDVLIARIWAWIMRVTRLEKFFPGKTSKPVEKYMKKDLARDDEIIDEEIKDDLYVERIRLEKLNFSLQNLSSKITIQEPTFDRIIVVYRLAGTKTKKERGIYVKHLKQIPMADMEIVLPEKKNPSLTPMDWVKFLTTAILGLAAATGSIETPQADFWVIVAVVSTIVGYCAKIYFTFQANMETYQNLITQFMYDKQLDSGKGTLLHLCDDVIQQEVKEVIVSFFILMEQGKATLKELDHKCEELLKEEFGERCNFDVDDAVHKLEKLGIISKDQIGRYYCAGLKRANEIIGTTTEELVLKAREEGGS 499
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca4g03450 499 Pfam Protein of unknown function (DUF3754) 273 394 IPR022227 -
Soca4g03450 499 PANTHER AMINOPEPTIDASE (DUF3754) 5 495 - -
Soca4g03450 499 Coils Coil 419 439 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca4g03450 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
156043 Soca3g01506 Soca4g03450
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr3:14945034 Soca4g03450 Soca-Chr4:65050779 wgd