AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca4g03452 ATGGAGTTACAGAGCCAGGTGGCGCAGGCGGTACACGTGTTGAATCACGATACACAATCATGTAATCGTGTATCAGCAAATCAATGGCTGGTTCAGTTTCAGCAAACAGATGCTGCTTGGGAAATTGCTACATCTATTCTGACTTCTCATCACTCTTCCGGTTTCGAAGTTGAGTTTTTCGCTGCCCAGCTTCTTAAACGAAAGATCCAAAATGAAGGACATTGTCTGCAGCTGGAAGCTAAGGAATCACTTGTTAATGCTCTTCTTCTGGCTGCTAAAAGATCTAGTTTAGGCCCGTCCCAGCTTTTAACACAAATTTGTCTGGCTTTATCCACACTGATACTTCATGCTGTGGAGTACTACAAACCAATCGAGAAGCTCTTTTACAGTCTTCAGAATCTTCAAGGTCAGGATGATGGCAATATTGTTGTTTTGGAAATGCTCACAGTCTTACCAGAAGTTGTTGAAGATCAATCTGCTAATTATAGAACCAAATCAGGTCAAAGAATTGACTATGGTCCAGAGTTACTCTTGCATACATCAGCAGTGCTTGAGTTCCTAAAGCAGCAATCTGAGGAAAGGTTTGATGATGTCGTTCAACTACATGAAAGGAGCAGAAAGATACTGCGTTGTTTGTTAAGTTGGGTTCGAGCAGGATGCTTCTCAGAAATTTTACCAGTATCGTTATTAGCCCATCCCCTTCTAAATTTTGTTTTCAACTCTTTGCAGGTTCCATCCTCATTTAATTTAGCTACTGAGGTTTTGATTGAGCTTGTTGGTCGGCATGAGGGATTGCCACAAGTTCTTATATGCAAAGTAGGATTTCTTAAAGATGTTCTTCTTCAAGCATTCAATGGCGGAGATGAGAAAGTAATCAGTGGTCTTGCATGCTTGATGTCAGAGATTGGTCAGGCTGCTCCAAGTTTGATCATAGAAGCCCACTCTGAAGTGCTTATGCTGGTGGATGCACTTTTGAGTTGTGTATCATATCCAAGTCAAGATTGGGATATTGCAGACTCAACCTTACAGTTCTGGTGTTGTCTTGCAAGTAACATTGTTCGAATGGATCTTGAAAATAGTGAACATGTCAAAGATGTTTTTTCCCCAGTATTTTCGGCATTGCTTGATGCTCTTTTAGTGCGTTCTCAGGTGGATGATGCAACATATAACAGTGAGACTGTAACAAGAGACTTACCAGACGGGCTTGCTCAATTTAGGTTAAATTTAGTGGAGCTTTTGGTGGATATTTGCCACCTTTTAAAGTCTGCTGCATTTTTGCAAAAGATTTTTTCTGGTGGTTGGATATCTTCAAACGTGCAAATTCCTTGGAAGGAGGTGGAAACCAGAATGTCTGCTCTTAATGTGGTTGCTGATGTAGTACTGCATGAGGGCCAAACTTTTGATCTCTTCATGGTATTGCACTTGGTGACAGTTTTATGTGATAGGGCATCGTATGAACCAAAAGGCTTTATGTGTATTGTACATAGATCACTTGCAGATGTTATTGGTTCCTATTCGAAGTGGATGTCTTCTTACATAACTAATGTCAGACCATTGCTTTTATTTTTTTCAGCTGGTTTGTCAGAACCATTGTGTACACATGCGTGTGCAACTGCCTTCAGAAAGTTTTGTGAAGATGCTACTGAAGTCATGCACAAACCTGCAAGTTTAGAAATGTTAATGTGGATTACAGAGGGATTGGAGAAGAGGCACCTACCTCTAGAAGATGAGGAAGATGTTATTGGTGCTGTTACTCTGATACTTGGATCGCTTCCTAACTTGGAGTTAAGAAACAGTTTGCTGCTTAAGTTGCTTTCTTCTAGCTTTGGATCTATTCGCAAACTTATTGACAGGGATCATGTTCATTCTTTGAGGCAACTACCAGCTGCTTATACTCATCTTGTCAGTTCTTCAGTGAGGGGGTTTTTCAGGATAGAAACTGTTTTCAGTCATCTTGTAATTACACCTTCTACATGTCATGATATAGACAATTCTGTAATTGTCATTCTTGAAAGTTTTTGGCCTCTCCTTGAGAAATTCCTGCAGTCAGAGCATATTGAGAATGCAGGTTTATCCATGGCAGCATGCAGGGCTCTCTCACAGGCAATCAAGTCTGCAGGTCATCACTTTGTGACATTGTTGCCCAAAGTTTTAGATTATCTATCAACAAATTTTGCGTCATTTCAAACTCACGAGTGCTACATTAAAACGGCTTCCGTTGTCGTAGAAGAATTTGGTAACAAGGAGGAATATGGACCTTTATTCATCAGTACATTTGAAAGATTTACAAATGCATCATCCGTAATGGCTCTAAATTCTTCTTATGTATGTGATCAAGAGCCCGATCTTGTGGAGGCTTATTGTAGTTTCACATCAATCTTTCTTCACAGTTCTTCAAAGGAAGTAGTGGCTTCTTCTGGCCCTCTTTTAGAAGTTTCACTTCAGAAAGCAGCTATATGTTGTACAGCTATGCATCGTGGAGCAGCACTTGCAGCCATGTCGTATATTTCTTGTTTCCTAGAGCTTTGTGTGACTTCATTGCTGGAATCAATGACATGTAACTCTGAATCATTAGTTACATCCATGGCCGTTCATGTAATATCTCACAGTGGCGAGGGACTTGTTTCAAATGTGGTTTATGCTTTACTTGGTGTTTCAGCAATGTCAAGGGTTCATAAATGTGCAACTATCTTGCAACAACTGGCGGCTGTATGCAGTTTTACTGAGAAAACAATGTGGACATCTATTCTTTGTTGGGATTCCTTACATGGATGGCTGCATGCTGCGGTGCGTAGTCTTCCCAGTGAGTACTTACGGCAGGGGGAAGCAGAGTCATTAGCACCAGTATGGCTAAGGGCCCTGGGTGATGCAGCTGTTGATTATATTGAAAGCAGAACCAGTGATGGAGATAGGAATCATAAACACATGCGGGGGAAGGGTGGCAGGATACTCAAGTATTTATTTCGGGAATTTGTTGATAGTCATCGTAACATTACTACGTAA 3003 40.83 MELQSQVAQAVHVLNHDTQSCNRVSANQWLVQFQQTDAAWEIATSILTSHHSSGFEVEFFAAQLLKRKIQNEGHCLQLEAKESLVNALLLAAKRSSLGPSQLLTQICLALSTLILHAVEYYKPIEKLFYSLQNLQGQDDGNIVVLEMLTVLPEVVEDQSANYRTKSGQRIDYGPELLLHTSAVLEFLKQQSEERFDDVVQLHERSRKILRCLLSWVRAGCFSEILPVSLLAHPLLNFVFNSLQVPSSFNLATEVLIELVGRHEGLPQVLICKVGFLKDVLLQAFNGGDEKVISGLACLMSEIGQAAPSLIIEAHSEVLMLVDALLSCVSYPSQDWDIADSTLQFWCCLASNIVRMDLENSEHVKDVFSPVFSALLDALLVRSQVDDATYNSETVTRDLPDGLAQFRLNLVELLVDICHLLKSAAFLQKIFSGGWISSNVQIPWKEVETRMSALNVVADVVLHEGQTFDLFMVLHLVTVLCDRASYEPKGFMCIVHRSLADVIGSYSKWMSSYITNVRPLLLFFSAGLSEPLCTHACATAFRKFCEDATEVMHKPASLEMLMWITEGLEKRHLPLEDEEDVIGAVTLILGSLPNLELRNSLLLKLLSSSFGSIRKLIDRDHVHSLRQLPAAYTHLVSSSVRGFFRIETVFSHLVITPSTCHDIDNSVIVILESFWPLLEKFLQSEHIENAGLSMAACRALSQAIKSAGHHFVTLLPKVLDYLSTNFASFQTHECYIKTASVVVEEFGNKEEYGPLFISTFERFTNASSVMALNSSYVCDQEPDLVEAYCSFTSIFLHSSSKEVVASSGPLLEVSLQKAAICCTAMHRGAALAAMSYISCFLELCVTSLLESMTCNSESLVTSMAVHVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAVCSFTEKTMWTSILCWDSLHGWLHAAVRSLPSEYLRQGEAESLAPVWLRALGDAAVDYIESRTSDGDRNHKHMRGKGGRILKYLFREFVDSHRNITT 1000
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca4g03452 1000 Pfam Exportin 1-like protein 100 255 IPR013598 -
Soca4g03452 1000 Gene3D - 2 949 IPR011989 -
Soca4g03452 1000 Pfam Importin-beta N-terminal domain 26 89 IPR001494 GO:0006886(InterPro)|GO:0031267(InterPro)
Soca4g03452 1000 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 5 996 IPR051345 GO:0005737(PANTHER)|GO:0006606(PANTHER)
Soca4g03452 1000 SUPERFAMILY ARM repeat 1 851 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca4g03452 K15436 transportin-3