AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02216 ATGGCAGTACCCCCATTCACTTTTATCTTAAAAACCCACCTCAAAATCACCATAATCTTGATATATACTATATGTATCTATAGTCCAAAGATACAAGCTTTTAAAGCACCTATGTATCCACAAGACATTCTTCCACTTTTGCCCAGACAAATTTCTTGGCCTATTCTTAATTCTCTTAGAGGTGCTGCTGATCTCCTTCCTAGCTTTGTGGGTGCCGCTTCGATATCGAATAATTCGGGTTTGAGTTGGAAAGGTTCTTGCTTTTATGAGAATACTGCTTGGTTAGAACTTCATAATAAAAGTGGTAGTCAATTTGGTGGTGGCACTCTTCATATTAAGGTAAGCAAGGCACACAGCTATACATGTATGGATATTTATGTATTTGCTACTCCATATCGTGTAACGTGGGACTATTATTTTCTATCGCGTTCGCATACTCTCGAGTTTGATGAGTGGGAATCAAAAGCCGAGTACGAATATGTTAAACGTAAGGGCATCGCTATTTTCCTTATGGAAGCAGGGATGATAGGAACCCTACAAGCATTATGGGAGGTCTTCCCCCTGTTCACAAATACTGGATGGGGTGAGAATTCTAATATTGCTTTTCTCACGAAACATATGGGAGCTAACTTTGAAGCACGTACCGGACCACTGGTTACAAATATTACTGAAGATGATATACACTCGGGAGACTTTCTTGCAATATCAAAAATTCGTGGTAGATGGGGTGGGTTCGAGAGCCTTGAGAAATGGGTATCCGGGGCATATGCGGGTCATTCGGCTGTTTGCTTGAGGGACCCGGAAGGAAAATTATGGGTTGGGGAATCTGGACATGAAGATGAAGAGGGTCAAGATGTTATCGTTTTGATGCCATGGGATGAATGGTGGAACTTTGAGTTGACTGAAGATGATGCTGATCCACATATTGCGTTACTTCCGTTGCATCATGAACTTCGGTCTAAATTTAATGAAACTGCTGCGTGGGAGTATGCACAAAGCATGATAGGGTTGCCATATGGTTATCATAATTTGATATTTAGCTGGATAGACACTGTCAGTGATAATTATCCACCACCTTTGGATGCTAATCTGGTTGCTTCTGTTATGACTGTGTGGAACCAACTGCAGCCTGCATATGCCAGTAACATGTGGAATGAAGCGTTGAATAAGCGGCTTGGTACCAAGGGACTTGAACTTCCTGATATTTTAGTTGAAGTAGCGAGACGTGGTTCATCTTTTGCTGAATTGCTGACTATACCCGAACAGGATGACTGGGTATATGCTGACGGAAAATCAACTTCTTGTGTGGCTTTCGTCCTTGAAATGTACAAGGAAGCAGGTCTCTTTGGAGATCTTGCAAATAAAATTCAAGTAACTGAGTTCACGATAAAGGATGCTTACTCGCTGAACGTCTATGAAGACAATTTGAGTCGCCTGCCAAAATGGTGTAATGAAGGAGACACAGTTGAACTTCCATTCTGTCAAATCAAAGGAAAGTATCGAATGGAACTACCTGGATACAACACTATTGAACCATATGCTCATATGGATGAAAGATGCCCATCGCTGCCCCCGGATTATTTAAGGCCAGAGTCCTGCTGA 1602 41.76 MAVPPFTFILKTHLKITIILIYTICIYSPKIQAFKAPMYPQDILPLLPRQISWPILNSLRGAADLLPSFVGAASISNNSGLSWKGSCFYENTAWLELHNKSGSQFGGGTLHIKVSKAHSYTCMDIYVFATPYRVTWDYYFLSRSHTLEFDEWESKAEYEYVKRKGIAIFLMEAGMIGTLQALWEVFPLFTNTGWGENSNIAFLTKHMGANFEARTGPLVTNITEDDIHSGDFLAISKIRGRWGGFESLEKWVSGAYAGHSAVCLRDPEGKLWVGESGHEDEEGQDVIVLMPWDEWWNFELTEDDADPHIALLPLHHELRSKFNETAAWEYAQSMIGLPYGYHNLIFSWIDTVSDNYPPPLDANLVASVMTVWNQLQPAYASNMWNEALNKRLGTKGLELPDILVEVARRGSSFAELLTIPEQDDWVYADGKSTSCVAFVLEMYKEAGLFGDLANKIQVTEFTIKDAYSLNVYEDNLSRLPKWCNEGDTVELPFCQIKGKYRMELPGYNTIEPYAHMDERCPSLPPDYLRPESC 533
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02216 533 Gene3D endopeptidase domain like (from Nostoc punctiforme) 226 400 - -
Soca5g02216 533 PANTHER OS01G0793500 PROTEIN 14 533 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02216 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
156565 Soca4g03197 Soca5g02216
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5126296 Soca Soca5g02216 Soca-Chr5:23682789 Soca9g01797 Soca-Chr9:20206450
5178043 Soca Soca4g03197 Soca-Chr4:62048553 Soca5g02216 Soca-Chr5:23682789