Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02250	ATGGAATCGATAATAGCAAGGGCGCTGGAGTATACTTTAAAGTACTGGCTGAAATCATTCACTAGAGATCAGTTCAAGTTACAAGGACGCACTGTTCAGCTCTCCAATTTAGATATAAATGGTGATGCTCTCCATGCGAGTCTCGGATTGCCGCCAGCATTGAATGTTAGAACCGCAAAACTCGGGAAGTTAGAGATTATACTTCCTTATTTGAGCAATGTACAAGTTGAGCCGATTGTTGTGCAAATTGATAAGCTTGATTTGGTTTTGGAGGAAAATGACGATTTGGATGCATATAAGAGTACAGACAGTTCACAAACGCCATCCAGTCCTTCAAAAGGAAGTGGATATGGATTTGCGGACAAGATTGCTGACGGGATGACACTGGAAGTACGGACTGTCAATCTTTTACTTGAGACACATGGGGGTGCTCGACATCGAGGAGGAGCAACTTGGGCATCACCAATGGCGTCTATTACCATCCGCAATCTCTTGCTATATACCACAAATGAGAACTGGCAGGTGGTAAACCTTAAAGAAGCGAGGGACTTCTCAAATGACAAGAAGTTTATCTATGTTTTCAAAAAACTTGAATGGGAGCATCTATCCATCGACCTCTTGCCTCACCCTGATATGTTTGCAGCATTTTCTGAAGGTGCATTTAAGGACGACGATGGTGCAAAACGAGTATTCTTTGGTGGGGAGCGGTTCCTAGAAGGAATATCCGGAGAAGCTTATATTACGATACAAAGGACAGAGCTTAATAGTCCGCTAGGGTTGGAACTCCAGCTACATATTACTGAAGCTGTGTGCCCAGCTTTGAGTGAGCCAGGACTGCGAGCTCTTCTTCGTTTTTTTACGGGATTGTATGTCTGTCTAAATAGAGGAGATTTGAATCCAAATGCTCAAGAGCGATCAGCAGAAGCTGCAGGGCGTACACTGGTCTCCATTATGGTGGATCATATATTTTTTTGCATCAAGGATACTGATTTCCAGTTAGACCTTTTGGTGCAGTCACTTCTCTTTTCCCGGGCAAGTCTTTCTGATGGAGAGATAACCAAATGCTTAACTCGGGTGATGATGGGTGGACTATTTCTGCGGGATACTTCCTCTCGACCACCATGCGCTTTAGTGCAACCGTCAATGCAGGATGCTGCAGATGAACCACTGCAAATTCCAGATTTTGGAAAGAACTTCTGTCCTCCAATATATCCATTAGGGGATCAGCAGTGGAAACTAAGTGAACGCGCTCCACTCATGTCCCTCCATTGTCTTCAGTTTATGCCTTCACCTAACCCACCATCCTTTTCTTCACAAACTGTCATTGACTGCCAGCCTCTTATGATACATCTTCAAGAAGAGTCATGTCTAAGAATTGCATCCTTACTAGCTGATGGAATTGTGGTTAATCCTGGTGATATTTTACCAGATTTTTCAGTCAACTCCCTTGAAGTCAAAGTCAAAGGATTAGATATCACTGTTCCACTGGAAAATCAAAATGATAGCTCCTTTAGTGGAGCAAGACTTCATATTGAGAACCTATTCTTTCACGAGTCACCTTTCCTGAGGCTTAGGCTACTCAATCTTGACAAGGATCCTGCATGCTTCTGTCTCTGGAAGGGTCAACCCATTGATGCCAGCCAAAAAAAATGGACAAGTGGAGCATCTTTATTTGATATGTCTCTAGAAACATGTGATAGCTTGAAAGGAGTAAATGGGTCCCGTTCACAATCTTCAAAGTTGTGGAAATGTGTTGAGGTAAAAGGTGTTTGTATTCAGGTTGCAATGGTAACAGCAGATGGAAGCCCATTAATAGACGTCCCTCCTCCAGGAGGAGTTGTTAGAGTTGGAGTTGCTTGTGAACAATATCTCTCCAACACTTCTGTTGAGCAACTATTTTTTGTATTGGATCTATATACGTATTTTGATACAGTCAACGAGAATATGGCTGTGGTTGGAAAAAGTAAACAGAAGAAGGCGGTGAAGCATGAGCTTTCTAATGGAAGTCTGATAGAAAAGGCTCCTGGTGATACTGCAGTTAGTTTAGCAGTTAAGGACCTTAAACTAATATTTCTAGAATCTTCCTTGGTGGATATCCAGGGAATGCCTCTAGTTCAGTTTGTTGGAGATGATCTGTTCATGGAAGTTACTCATAGAACCTTGGGTGGTGCCATGGCAATTTCATCAACTTTAAGGTGGGACAGTGTTCAGGTTGACTGTGCCGAAACTGAGATAGCCCCAGTACATTCGAAGGGTTTAGTGTCAAATGCTACTGAAGATGTTCTTCCTGCTCTAAATGGCTATCCTAAACTGAGAGCTGTCTTTTGGGTGCAAAATGAAACGAATATTCCATTTTTGAGTTTAAGCATGGTGCACGTTATTCCTTATAATGCACGAGATACCGAGTGTCATACGTTAAGTGTGTCGGCTTGTATTGCGGGTGTACGTCTTGCAGGAGGAATGAATTATGCTGAAGCTCTGCTCCACCGCTTTGGAATTCTAGGACCAGATGGTGGGCCAGGGTTTGGGCTCTCCAAGGGTTTGGACCATTTATCTGTGGGCCCATTGTCGAAACTTTTCAAAGCATCACCTTTGCTTGTTGAGGCCAGGGAGAGTAAAAGTGAAAGCATAGAGGAGAATCCTAGTGGTTACTTGCACTTGGGTACACCTGATGATGTGGATATATCTCTAGAATTGAAGGACTGGTTATTTGCATTGGAGGGTGCAGAGATGGCAGAAAGGGCGTGGCTCTACTGTTCTGAGGATTCTTACAGAGAAGAGAGGTGCTGGCACACAACTTTTGAGAGTTTTAAAGTTAAAGCAAACAGCAGCAAAAGACAGTCAGTTAATGGCAAAAAGAGTTTATCTGGAGCATTCAAGTATCCTGTAGAATCAGTGACGGTTGGTGTTGAAGGCTTGAAGACGTTGAAACCCCAACAGCAGAAAGAAGTAGCCCACCAAAATGGGCACAAAAAAACTGTTGAGTCACATGGTGGGGTAGATCTTGAAGCTGACATAGTTTTAAACGAAGATGATGGTGTCAATGGGATGATCAATTGGGTGGTGGAAAGCTTAAAATTTTCTGTGAAACATCCGGTTGAGGCAATTGTAACCAAGGATGAGCTGCAACATGTTGCTCAATTATGCAAGTCAGAAGTTGATTCCATGGGGCGAATAACTGCTGGGGCTTTGCGTGTGTTAAAGTTAGAAGGATCAGTTGGTCAGACAACAATGGATCAGCTAAGCAGTCTCGGAAGTGAAGGGTTTGAAAAGATCTTCTCACCAGTTAACCGTCGTAGAGATAGTAATGCTTCTGGTGGAATGAGCCCTTTTTCCCTAGTGGCTTCTGAGAACCAACTCTCTTCATCCTTTAATACAACATTATCGTCACTCGAGGCTGCATTATTAGAATCACAAACAAATTGTGCATCCCTTGCTTCTGAGTTAAGCATGTCTGAATCTTCCAAACCACACCTTCATAGTGTAGAACAACTCGCCCAGAAACTAGAGAGTATGCAACAATTGTTATTGAAGTTGCAGTCTCGGGTATAG	3552	42.99	MESIIARALEYTLKYWLKSFTRDQFKLQGRTVQLSNLDINGDALHASLGLPPALNVRTAKLGKLEIILPYLSNVQVEPIVVQIDKLDLVLEENDDLDAYKSTDSSQTPSSPSKGSGYGFADKIADGMTLEVRTVNLLLETHGGARHRGGATWASPMASITIRNLLLYTTNENWQVVNLKEARDFSNDKKFIYVFKKLEWEHLSIDLLPHPDMFAAFSEGAFKDDDGAKRVFFGGERFLEGISGEAYITIQRTELNSPLGLELQLHITEAVCPALSEPGLRALLRFFTGLYVCLNRGDLNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFQLDLLVQSLLFSRASLSDGEITKCLTRVMMGGLFLRDTSSRPPCALVQPSMQDAADEPLQIPDFGKNFCPPIYPLGDQQWKLSERAPLMSLHCLQFMPSPNPPSFSSQTVIDCQPLMIHLQEESCLRIASLLADGIVVNPGDILPDFSVNSLEVKVKGLDITVPLENQNDSSFSGARLHIENLFFHESPFLRLRLLNLDKDPACFCLWKGQPIDASQKKWTSGASLFDMSLETCDSLKGVNGSRSQSSKLWKCVEVKGVCIQVAMVTADGSPLIDVPPPGGVVRVGVACEQYLSNTSVEQLFFVLDLYTYFDTVNENMAVVGKSKQKKAVKHELSNGSLIEKAPGDTAVSLAVKDLKLIFLESSLVDIQGMPLVQFVGDDLFMEVTHRTLGGAMAISSTLRWDSVQVDCAETEIAPVHSKGLVSNATEDVLPALNGYPKLRAVFWVQNETNIPFLSLSMVHVIPYNARDTECHTLSVSACIAGVRLAGGMNYAEALLHRFGILGPDGGPGFGLSKGLDHLSVGPLSKLFKASPLLVEARESKSESIEENPSGYLHLGTPDDVDISLELKDWLFALEGAEMAERAWLYCSEDSYREERCWHTTFESFKVKANSSKRQSVNGKKSLSGAFKYPVESVTVGVEGLKTLKPQQQKEVAHQNGHKKTVESHGGVDLEADIVLNEDDGVNGMINWVVESLKFSVKHPVEAIVTKDELQHVAQLCKSEVDSMGRITAGALRVLKLEGSVGQTTMDQLSSLGSEGFEKIFSPVNRRRDSNASGGMSPFSLVASENQLSSSFNTTLSSLEAALLESQTNCASLASELSMSESSKPHLHSVEQLAQKLESMQQLLLKLQSRV	1183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02250	1183	Pfam	VPS13-like, N-terminal	1	102	IPR026854	-
	Soca5g02250	1183	Coils	Coil	1162	1182	-	-
	Soca5g02250	1183	PANTHER	UNCHARACTERIZED	1	1180	IPR026728	-
	Soca5g02250	1183	MobiDBLite	consensus disorder prediction	100	114	-	-
	Soca5g02250	1183	MobiDBLite	consensus disorder prediction	99	118	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02250	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	156561	Soca4g03173	Soca5g02250

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	5122959	Soca	Soca4g03175	Soca-Chr4:61830846	Soca5g02250	Soca-Chr5:23975903
	5122960	Soca	Soca4g03176	Soca-Chr4:61830846	Soca5g02250	Soca-Chr5:23975903
	5178039	Soca	Soca4g03172	Soca-Chr4:61830846	Soca5g02250	Soca-Chr5:23975903