Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02312	ATGTTCACCAAATTCATTTTCCGGCCATCACCCCCTTTCTCCATGACCCTATCTCCTCCCCTGACCCCCGTCATCTTCCACCACTCCACTGCCGTCACCTTCCGTTGCATCTCCGCCGCCACACCCCTTTTCACTACCCAACCGTACGGCCCCTCTTTATCCAAAGGCATAAACCCCATTTCAAAAACCCAACAAGAAACCAACAATCAAGATTCATTGTCGAATTTCGACGAAACCCACTTCACTCGTGTATACAACATCTCAGCTCTTAAAGTCACCGCAAGTCAATGCCATGTTTTAGAAAGTCAACTCCGTGGTCACTTGCTGAACTGGCCTAGAATCCGAAACATTGCGAGAGTACCCGGAGACGAAATAGACCCGGAATTACAAAAGTATTTCGAGTCCGAAAAATCCTTTAATGAGAACACTTTAGATAGGAGGATTTATGGAAAAGGGGAAGGGGATGGGGAGCTTTTGAGTCCGGTTTTGTATAGAGATAAGCTTGTCAAGAGTTTTGATTCGAGGGGTTTTGAAAAGTTTAGGAATTTGGCTAAGTTGTCTAGACCGAAAAGGAATGGGAGAACGAAAAAGGAGACGAAAACGAGTCAAGGTAGAGGGAGCGGGAAGAATGAGTGTTATTTGGTGGAAGAGGTTTTTGAGGATGATGAGGGTGATAAGGAGGATTTGAGCGGGTTGATTGGAGACAGGGAATATAGGGTTGGGAAGTGGAGAGGTTCTACGAGATTGTTGCTTTTGGATGAAGGGTATGCTGATGCGTCGATAGACGAGTTGCCTCAGGCGATTAAGGCTTGCCTAAAGGAATCATTATTTGAACTTGTGAGATGCAAGCTGACTTTGTTTTACACTTATTGGCAGATGAATGAGGTCCTAGAGGCTTTTCTTCCAAACGGCATGATTGTCCCTTCATCATTTGAGACTGTTGGGCATATCATCCATTTGAACTTGAGAGATGAACACCTTCCATATAAGAAGATTATAGCAAAGGTTGTTTTGGACAAAAACAAGCCAAAGATACAAACAGTTGTCAATAAGCTTGATGCCATCAATAATGACTTTAGAACAATGCAGCTTGAAGTTTTGGCTGGAAATCATTCTCTTGTGACAAAAGTAGTAGAGAATGGACTCCAATTTCATGTTGATTTAGCAGCAGTGTACTGGAGCTCAAAGTTGGGAACAGAGAGGCAAAGACTTTTGAATTGCTTTACACGTAGTGATGTTGTCTGTGACGTTTTTGCTGGGGTTGGTCCGTTAGCTATATCTGCAGCGAAAAAGGTTAAGCATGTGTATGCAAATGACTTAAATCCCCATGCAGTTGACTATATGGAAAGAAATTGTGTGCTCAACAAACTAGAAAGAAAGATTGAGGTTTTTAACATGGATGGAAGAAGATTCATTGATGCTATCTTTAAGAGTCAAAACACCCGGCCCATCACACAAGTTGTCATGAATCTGCCTAAGGATGCAGCGGAGTATCTTGATGCATTTAAAGGAATATTTAGGGATCTTGAAAGGAATGAAGAGTTAACCTTACCAAATATTCATGTCTATGGATTTTCCAAAGCTGAAGATCCTGAGTTTGAGTTTCATGAGCGGATAAGAATTGCATTGTCGGAGGTGGCCTTTGAAGTTAAAATGCATAAAGTACGTCTTGTCGCCCCCGGAAAATGGATGTTATGTGCATCATTTGTTCTTCCCGAGAAGGTCGCATTTGCGAATCCGATTTCAGAACTATAA	1755	42.34	MFTKFIFRPSPPFSMTLSPPLTPVIFHHSTAVTFRCISAATPLFTTQPYGPSLSKGINPISKTQQETNNQDSLSNFDETHFTRVYNISALKVTASQCHVLESQLRGHLLNWPRIRNIARVPGDEIDPELQKYFESEKSFNENTLDRRIYGKGEGDGELLSPVLYRDKLVKSFDSRGFEKFRNLAKLSRPKRNGRTKKETKTSQGRGSGKNECYLVEEVFEDDEGDKEDLSGLIGDREYRVGKWRGSTRLLLLDEGYADASIDELPQAIKACLKESLFELVRCKLTLFYTYWQMNEVLEAFLPNGMIVPSSFETVGHIIHLNLRDEHLPYKKIIAKVVLDKNKPKIQTVVNKLDAINNDFRTMQLEVLAGNHSLVTKVVENGLQFHVDLAAVYWSSKLGTERQRLLNCFTRSDVVCDVFAGVGPLAISAAKKVKHVYANDLNPHAVDYMERNCVLNKLERKIEVFNMDGRRFIDAIFKSQNTRPITQVVMNLPKDAAEYLDAFKGIFRDLERNEELTLPNIHVYGFSKAEDPEFEFHERIRIALSEVAFEVKMHKVRLVAPGKWMLCASFVLPEKVAFANPISEL	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02312	584	MobiDBLite	consensus disorder prediction	188	208	-	-
	Soca5g02312	584	PANTHER	TRNA METHYLTRANSFERASE	86	577	-	GO:0002939(PANTHER)\|GO:0005737(PANTHER)\|GO:0008175(PANTHER)\|GO:0009019(PANTHER)\|GO:0030488(PANTHER)
	Soca5g02312	584	FunFam	tRNA (guanine(37)-N1)-methyltransferase	374	571	-	-
	Soca5g02312	584	Pfam	Met-10+ like-protein	310	508	IPR030382	-
	Soca5g02312	584	CDD	AdoMet-MTases	414	478	-	-
	Soca5g02312	584	FunFam	tRNA (guanine(37)-N1)-methyltransferase	293	371	-	-
	Soca5g02312	584	ProSiteProfiles	SAM-dependent methyltransferase TRM5-TYW2-type domain profile.	311	573	IPR030382	-
	Soca5g02312	584	Hamap	tRNA (guanine(37)-N1)-methyltransferase [TRMT5].	73	573	IPR025792	GO:0030488(InterPro)\|GO:0052906(InterPro)
	Soca5g02312	584	Gene3D	Vaccinia Virus protein VP39	374	571	IPR029063	-
	Soca5g02312	584	Gene3D	-	292	370	-	-
	Soca5g02312	584	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	307	573	IPR029063	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02312	K15429	tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:24623453	Soca9g00973	Soca-Chr9:10917043	dispersed
	Soca	Soca-Chr5:24623453	Soca5g02313	Soca-Chr5:24623453	tandem