AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02314 ATGATGGATGATAATAACAAGAGAAAGAAAAAGAGAGGGAGAAAAAACAATTTTTCCTGTTCTTGTTTTCCTTCATTAATCACCCCGACTGAACATAAACCTTTTTTATGTCATGACAATAATAATAATAATAATTTAGATGCCCATATTACTACTAGTACTAAAAATGGACGTGTTTTGATCCCTGTTGACAATGATCATCGCGTTCCTTCTCCTCATCGTCCACGTATTATTTCTCGCTTAGTTAAAGCGGTTTTGTTTGGTTCATTGATGGCAAAGAAGATTCATAGGAGTTCATCCAAATCTTCGATGGCTAATTCGGAGAGTGGATCGTACATAACATATGACAAAACCAGCGATGACAATAATGCGTGCGTTAGGGAATGTGCAGATACGGACGATACAAGCAGTCGTAGTCGTTCAAATTTGTTAACATCTTCTTCTTCGTCTTCTTCATCTTCAGGGACTAATTGTTCTTCTTCATGTTCGTCCACATTTTCAACTTCTAGGTCATCTTCTCAACAAAAATCATCATCATCTCAAATAGATTTAGTCGATTTTAGACACCCCATTTCATCCAAATCAATTCTTGACCAAAAGGTTTCGTCCCGAATGGATCCACGTCATTTGAGACATCAAGATTCATCTGTTTCGGTTTCGCTACCTTTAGCGAACCCAAAACCTATGAATTCTATTCATAAATCTTTGTCCTTTCAAAAAGGACTATCGCGATTAGATTCATCAGATTCTGCAAGTTTGCGTTCTTTGTCAGGTTTAAATCGTGATAATAAGACCAAATGTAGCCGTAACAATGGGAATATTCTTTGGTATTTCTTTCTTTTCTTAAGTCTCGTTGTTTTAGTAGTTTACGGAAGGATTTTCTCGATTCTATGTACATCAACTTGGTTCTACTTTGTACCTTGTCTACGGCTTAAACGAGTAAATTCATCTACCAACATGACCGCGTTTGTGGATACTGATTCAGAACGATACAAGAAGAGAATAATCATGGCTGGACTACTTGATAGAACTCGAAATCCCTTCCGGTAG 1050 36.95 MMDDNNKRKKKRGRKNNFSCSCFPSLITPTEHKPFLCHDNNNNNNLDAHITTSTKNGRVLIPVDNDHRVPSPHRPRIISRLVKAVLFGSLMAKKIHRSSSKSSMANSESGSYITYDKTSDDNNACVRECADTDDTSSRSRSNLLTSSSSSSSSSGTNCSSSCSSTFSTSRSSSQQKSSSSQIDLVDFRHPISSKSILDQKVSSRMDPRHLRHQDSSVSVSLPLANPKPMNSIHKSLSFQKGLSRLDSSDSASLRSLSGLNRDNKTKCSRNNGNILWYFFLFLSLVVLVVYGRIFSILCTSTWFYFVPCLRLKRVNSSTNMTAFVDTDSERYKKRIIMAGLLDRTRNPFR 349
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02314 349 PANTHER OS07G0553800 PROTEIN 5 345 IPR040411 -
Soca5g02314 349 MobiDBLite consensus disorder prediction 198 217 - -
Soca5g02314 349 MobiDBLite consensus disorder prediction 136 184 - -
Soca5g02314 349 MobiDBLite consensus disorder prediction 131 184 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02314 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:24646529 Soca4g04244 Soca-Chr4:73174488 dispersed
Soca Soca-Chr5:24646529 Soca5g02558 Soca-Chr5:27996507 wgd