AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02318 ATGGGACGTGGACTATTCTCATGTTTCCAAAAACAAACACCCAACAACAACAATTCATTAACACCCGCAGACAACACAGCCGCCACATCAGACGAGGCATCATCAAAACAAACATTGTCATCATCAGGACCAATAGTAGTGGAACTATTTTCATCACAAGGATGTGCGACGTCACCCGAAGCTGAGCTACTGTTTTCAAGGCTAGGAAGAGGGGATTTTAAGCTACAAGTAGGAGTGATATTGATGGGATATCATGTTGATTATTGGGATTATAATGGATGGAAAGATCCATTTGGGTCAGCACAATGGACAGTCAGACAAAAAGAATATGTGGAATCTTTGTGTTTGGATACTATGTTTACACCACAAGTTGTTGTTCAAGGTAGGAAACAGATTGTCGGGAATGATGAAGATGGTTTGATTGCTGAGATTGTTAATGCTCCTACATTCCCTCCTCCTTCTTTTCAGGCAACATTCGAGAGGCCAACACCAGAATCCTTGAAAGTCTCTCTGAATGGAACCTTAAGGGCCAAATCTGACGGCCAGGGAGCAGACATCATGGTGGCACTCTACGAGAGTGGACTTGTAACCGACTGCCAGAGTGGTGACAACAAAGGCCGTATGCTCGCCAATGATTTAGTAGTTAGAAAGCTCACAAAGCTCTGCTCCGTCAACAATCAACCCCCCAAGAAGATAATAACAGGAACTCTAGATTTTGGCCTTTGGCAAGGTTTCAACAGCAGCAAATGTGGTCTTGTTGTATTTGTGCAGCAACATGGGTCGCGTCATATATTTGGTTCCCAGCGCATTCAACTACCTGCAAATATCTGA 831 43.68 MGRGLFSCFQKQTPNNNNSLTPADNTAATSDEASSKQTLSSSGPIVVELFSSQGCATSPEAELLFSRLGRGDFKLQVGVILMGYHVDYWDYNGWKDPFGSAQWTVRQKEYVESLCLDTMFTPQVVVQGRKQIVGNDEDGLIAEIVNAPTFPPPSFQATFERPTPESLKVSLNGTLRAKSDGQGADIMVALYESGLVTDCQSGDNKGRMLANDLVVRKLTKLCSVNNQPPKKIITGTLDFGLWQGFNSSKCGLVVFVQQHGSRHIFGSQRIQLPANI 276
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02318 276 PANTHER - 1 276 IPR010634 -
Soca5g02318 276 Pfam Protein of unknown function (DUF1223) 46 257 IPR010634 -
Soca5g02318 276 SUPERFAMILY Thioredoxin-like 42 272 IPR036249 -
Soca5g02318 276 MobiDBLite consensus disorder prediction 11 39 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02318 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:24682598 Soca5g02563 Soca-Chr5:28036754 wgd