AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02319 ATGGCAAGCACAAAAAGTTTGATTTTGATTGTTTTGGCAACAATTGCAATTTCTTGTGCAATCACACAAGTGAAAGCATACTCAAGCTCTTACTGTGGCCCTTGGTCTCGTTGCGAGGGGAAAACCTTATATTGCCCTTCCGAATGTCCCTCAAGTGTCTCCAACGACCCCAAGGCTAAAGTTTGTCGCATTGACTGCTATTCTCCTAAATGCAAGGCCGAATGCAAAAACCCTAAAGCAAACTGCAACACCCCGGGATCAGCATGTTACGACCCACGCTTAATTGGAGGAGACGGCATTGTGTTCTACTTTCACGGAAAGGTCAACGAGCATTTTAGTTTAATCTCCGACTCTAACCTTCAAATAAACGGCCGATTCATTGGCCACAGGCCAGAGGGCCGATCCAGGGACTTCACATGGATCCAAGCATTGGGTCTTCTCTTCAACTCCCACTCTTTCTCACTAGAAGCCACTAAATCTACCACATGGGACAGCGAAATCGACCACATTAAGTTCTCCTTCGATGGGGAACAAATCTCTCTACCCACCGGTGGACTTTCCACATGGAAATCCCCGAATGATGAAGTTAAGATCGAGAGAACTTCTGCGGTAAACAGTATTATGGTGACCGTTCCTGGGGTGGTTGAAATTTTGGCTAATGTAGTCCCAGTAACCGCAGAAGATGACAAAATTCATGGCTACAAGGTTCCTTCAGATGATTGTTTTGCTCATTTGGAAGTTCAGTTTAGGTTTGTTGGACTTTCGGACAACGTTGAAGGGGTGTTGGGAAGGACTTATCAGCCCGATTTCAAGAACCCTGCGAAGCCAGGGGTCGCGATGGCGGTTGTGGGAGGTGAAGACAAGTATAAAACAAGCACGTTGTTGTCAGCTGATTGTGCAAGTTGTATTTTTGATGAGAATAAAATTGTGGAGAAAGAGAAAGAGATGATGGAGAATGGAGCATTGGATTGTTCTGCTAAAGGATTGTTTCATGGAAATGGGATTGTTTGCAAGAAATGA 1020 44.9 MASTKSLILIVLATIAISCAITQVKAYSSSYCGPWSRCEGKTLYCPSECPSSVSNDPKAKVCRIDCYSPKCKAECKNPKANCNTPGSACYDPRLIGGDGIVFYFHGKVNEHFSLISDSNLQINGRFIGHRPEGRSRDFTWIQALGLLFNSHSFSLEATKSTTWDSEIDHIKFSFDGEQISLPTGGLSTWKSPNDEVKIERTSAVNSIMVTVPGVVEILANVVPVTAEDDKIHGYKVPSDDCFAHLEVQFRFVGLSDNVEGVLGRTYQPDFKNPAKPGVAMAVVGGEDKYKTSTLLSADCASCIFDENKIVEKEKEMMENGALDCSAKGLFHGNGIVCKK 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02319 339 Pfam Root cap 248 304 IPR009646 -
Soca5g02319 339 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 28 339 - -
Soca5g02319 339 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02319 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:24689063 Soca9g03443 Soca-Chr9:42910440 dispersed
Soca Soca-Chr5:24689063 Soca5g02564 Soca-Chr5:28043244 wgd