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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02320 ATGTTAGAAGGCAAGGCTGTGATCGGGGAGACCGATATGCTTCAAACCATGCAAGATGATGCACTTCAACTCGCGGCTAAAGCACTTGATTTCTATGATGTAACGGATGCCACTGAAATAGCACGAGTCATTAAACAGGAATTTGATAAGGCGCATGGAGGTGGATGGCAGTGTATAGTAGGGACTGATTTTGGTTCATTTGTGACTCATTGTTATGGGTCTTTTATCCATTTTTCGATTGGGAGTCTTGCGATTTTGCTGTTTAGAGGATTAGCAGCTCCAGAGATTGATGAATTTTCAGGTTTTGAGGGTGTCAAAGCATGA 324 42.59 MLEGKAVIGETDMLQTMQDDALQLAAKALDFYDVTDATEIARVIKQEFDKAHGGGWQCIVGTDFGSFVTHCYGSFIHFSIGSLAILLFRGLAAPEIDEFSGFEGVKA 107
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02320 107 CDD DLC-like-DYNLL1-DYNLL2 5 89 - -
Soca5g02320 107 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 2 90 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Soca5g02320 107 SUPERFAMILY DLC 1 89 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Soca5g02320 107 PANTHER DYNEIN LIGHT CHAIN 7 89 IPR001372 GO:0005868(PANTHER)|GO:0007017(InterPro)|GO:0030286(InterPro)|GO:0045505(PANTHER)
Soca5g02320 107 SMART Dynein-light-2 1 90 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Soca5g02320 107 Pfam Dynein light chain type 1 5 89 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Soca5g02320 107 FunFam Dynein light chain 1 90 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02320 K10418 dynein light chain LC8-type
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr1:33979330 Soca5g02320 Soca-Chr5:24695376 dispersed
Soca Soca-Chr5:24695376 Soca5g02566 Soca-Chr5:28050933 dispersed
Soca Soca-Chr7:76831155 Soca5g02320 Soca-Chr5:24695376 transposed
Soca Soca-Chr5:24695376 Soca5g02565 Soca-Chr5:28050933 wgd