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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02368 ATGGCTAAAAACGTTTGTTGGTTTCTTGTTATAATCTTAGCAATCTATTTTCCGTGTTTTCAAACAACAGTGTCCATGTTACCCCAATGGTCTGTACTAAGCCGTTTGTCGGGGGCATCTCGTCAACTCGTGGATGACACAATTGACATGAGGGAAGAAATGATGATGGAGTCCGAAAGTGCTCGACGAGTCCTGGCTGGAAGGGGTTATATAAGCTATGGCGCGATGCATAAGAATAATGTTCCGTGCAACCAACGTGGTCAATCTTATTACGATTGTAATAGTAGAGGAGAGGCTAACCCGTATAATCGAGGGTGTAATGTTATTACTAGGTGTGGTGGTCGCTAA 348 43.39 MAKNVCWFLVIILAIYFPCFQTTVSMLPQWSVLSRLSGASRQLVDDTIDMREEMMMESESARRVLAGRGYISYGAMHKNNVPCNQRGQSYYDCNSRGEANPYNRGCNVITRCGGR 115
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02368 115 PANTHER RAPID ALKALINIZATION FACTOR-LIKE 13 112 - GO:0009506(PANTHER)|GO:0019722(PANTHER)
Soca5g02368 115 Pfam Rapid ALkalinization Factor (RALF) 52 113 IPR008801 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02368 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr1:1646523 Soca5g02368 Soca-Chr5:25255592 dispersed
Soca Soca-Chr5:8288996 Soca5g02368 Soca-Chr5:25255592 dispersed
Soca Soca-Chr5:25255592 Soca8g01382 Soca-Chr8:17609577 dispersed
Soca Soca-Chr5:25255592 Soca5g02624 Soca-Chr5:28606086 wgd