AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02392 ATGGAGGAAGAATACACAGTAGTTGATACTTCAAAGCTTCTTCAAGCAGCTACTGATTTCTCTTTTGATCCTGGCACTCGATCAGAAGCTGCTGTGAAACAATTTCTCACTTCTTTTCCACTTCCTGTTATCATCAATGCTTTGCAAACGAAGAGTGATGTGCCTGGTTTGGAGAATGCGTTGATCGATTGTCTAGAGAAGATTTTTAAAACTAAATATGGGGCTTCTCTCATTCCGCATTTCATGTCTTTCATTGTGGTTGGCCTGCAGGCAGATTCTCAGAGAGTCAGAACTTTGTCGTGTAAAACGATCTCAAGCCTATTGGAGAACCTTGAAGACAATACTGGTTTAGCTGCTTCACTGGTCAAAGAATATGGCGTGTATCCGCTTTTGCTTAATTGCCTCATTGACGGTGATGAACAAGTGTCTGTTGCTGCAACAGAGGCAATCAAGACTTTAGCCACCTCTCAACAGGGGATAGAAGTCATATTTCCAGCTACTCCGAATGAAACTACGGATATCACAAATGTAGCAGCAAGATGTTCATCATTGGGACGAGTACGAGTTTTGGCATTGATAGTGAAACTTTTTTCTACTTCCACTGCTGCTGCAACATTAGTTTACAACTCAAATCTCCTTGGTCTCTTGGAGGCAGAAGTTCGCAATGTTAATGACACGCTTATAACCTTGAGTGTTTTGGAGCTCCTTTACGAGTTGACTGAGGTCCAGCATGGAATGGAATATGTAGTACAGACCAATATTTTACAGTTGCTAATTTCCATAATCAGAAATTCTTCTGCTGAATCGATGTTGAGATCAAGGGCCATAATGATAAGCGGGCGGCTTTTATCCAAAGAGAACATTTTAACTTTAATAGGCGAATCCGGTGTTAAAGATGTGATTTCAGCCATTGATGAAAGGCTTTCAACCCTTGATAATGAAGATGCAGATGAATGCGAATGTGCTCTTGAAGCATTGGGTCACATAGGGTCATCAAGACTGGGAGCTGTCTTGATGCTGTCAAACGCATCTGCTGCTAGACATGTTATTAACACTGCCTTTGACCTCCATGCCCGTGGCAGACAACTGGCTGCATTGCATTCTCTGGGGAACATTGTGGGAGAAACTCGGCCTGAAAACAACCAACTGTTGAATGATGATGCTGAAGAAAGCCTTCGTAGATTAATTTATGAAACTGCATCCAACACACCGAAGCTCGTACCATCGGGTCTTGTTCTTGCAATTCTTAAACTTGAGTATGAATTTCGTATTGCGGGTTACAGGTTGATAACAGGATTGACTGCTAGACCATGGTTTCTGGTGGAGATCTGCTCAAGACAAGAGATAATAAATAAGCTGATTGATTCATTTACAGAAACTTCTAAGATAGGTATGGAAGCAAGATACAAATGTTGTGAGGCAATCTATAAGGCTCTTGCTTCATCACCTAAATTTCTGAGCGATCCAGCTCTGTCTTGCACAGCTAAACAGCTACTGGAAGCCATCAAAAAGGGTCCTTATCTTGCGAAAGGACGACAACGTGAAGCCCAACCTGAAGTAGCTACTGCTGACAGATTTTAG 1581 42.0 MEEEYTVVDTSKLLQAATDFSFDPGTRSEAAVKQFLTSFPLPVIINALQTKSDVPGLENALIDCLEKIFKTKYGASLIPHFMSFIVVGLQADSQRVRTLSCKTISSLLENLEDNTGLAASLVKEYGVYPLLLNCLIDGDEQVSVAATEAIKTLATSQQGIEVIFPATPNETTDITNVAARCSSLGRVRVLALIVKLFSTSTAAATLVYNSNLLGLLEAEVRNVNDTLITLSVLELLYELTEVQHGMEYVVQTNILQLLISIIRNSSAESMLRSRAIMISGRLLSKENILTLIGESGVKDVISAIDERLSTLDNEDADECECALEALGHIGSSRLGAVLMLSNASAARHVINTAFDLHARGRQLAALHSLGNIVGETRPENNQLLNDDAEESLRRLIYETASNTPKLVPSGLVLAILKLEYEFRIAGYRLITGLTARPWFLVEICSRQEIINKLIDSFTETSKIGMEARYKCCEAIYKALASSPKFLSDPALSCTAKQLLEAIKKGPYLAKGRQREAQPEVATADRF 526
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02392 526 Pfam Proteasome non-ATPase 26S subunit 65 512 IPR019538 GO:0043248(InterPro)
Soca5g02392 526 Gene3D - 23 206 IPR011989 -
Soca5g02392 526 Gene3D - 247 510 IPR011989 -
Soca5g02392 526 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 1 526 IPR019538 GO:0005829(PANTHER)|GO:0043248(InterPro)
Soca5g02392 526 SUPERFAMILY ARM repeat 42 487 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02392 K06692 26S proteasome non-ATPase regulatory subunit 5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:25452347 Soca5g02644 Soca-Chr5:28808361 dispersed
Soca Soca-Chr5:25452347 Soca5g02643 Soca-Chr5:28808361 wgd