Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02409	ATGTTATCAATTTCCCAGCACCCATTAATCCCCCCCTTTAAATTAAAAACCCAAGATTTAAAATTCTTATTATCAAAACCCCATCTTCATAATCATCAAAAATATCCCAACAAGATTACCTACAACACTTATGGCTATAGATATAGATACAGATACAGATGTAAGTCTTGTTTTTGCTCAAAGTTGGATATGGTTTCTTTTAGTTCAAGTGAAGAAGAATTCGAGATGGAATTGGGACGATTATTGCGATTATTACCGGAGGAAATGCGGCGAAAGGTTACCGAACACGAAGAGCTCCATCAATTGATTGAAGTTGTTATGGATTTGGGTCGAAAACCATTGGCCCGGTTTCCGTCTGGTGATTTCGTGTTATCGGATCATTTGATCACTGTGGATGATCTTGAACATGCTACTTCTTTGGTAGGTGATTTTGCTATTGATAATCGAGCTGGGATCAGCAGAACTTTGCATCGAATTAGTGCTATCAGAAACCGCAAGGGTGCTGTTATTGGGCTAACATGTCGTGTTGGCCGAGCTGTTTCTGGAAGTGCTAAATTATTGCAGGATTTGGTTAAAGATGGATCTTCGTTATTGCTTATTGGACCTCCAGGAGTTGGGAAAACTACAATTATTAGGGACATAGCTCGAATGCTTGCAAATGAATATAACAAACGTGTCATGATTGTTGACACCTCAAATGAAATTGGCGGAGATGGTGATATACCTCATGCAGGTATAGGTAATGCTCGTCGGATGCAAGTTCCTGATTCTGATATGCAACATAAGGTGTTGATAGAAGCAGTTGAAAATCATATGCCTCAAGTCATTGTAATAGATGAAATTGGTACAAAACTTGAAGCAGCAGCTGCAAGCACTATTGCACAACGTGGGATTCAGTTAGTTGCAACTGCTCATGGTATTACAATAGAGAATTTGGTGCAGAATCCTTCATTGGAGATGCTTGTTGGAGGAATACAGAGTGTGACACTTGGAGATGAAGAGGCAAACCGAAGAGGTGTACAGAAATCAGTGCTGGAGAGAAAAGGTCCTTCTACTTTTGATTGTGCCGTGGAAATCATTTCTAGGCTCGAGTTGAGAGTTCATAGTAGTCTTGAAGCAACAGTTGATGCTATTCTTTCTGGCCGTTCCCCAAGATATCAAATTTGCAAGTTAAATGAGGGAGTGATAGATGATACCTTACAAAGTGATCCGATTGCATATGATTCATTTGTCAAGAAGAGTGTAGATACGATTGAAGGCATTTCACCATGGAACAATGAAAAGCTTACACCTGACAGAAATATTGCAAAAGTATCTCAAAGTGACAGAGAGAATTCTTATGATAAACCACCCCTGTGTTTATTTCTCTATGGGGTATAA	1380	39.35	MLSISQHPLIPPFKLKTQDLKFLLSKPHLHNHQKYPNKITYNTYGYRYRYRYRCKSCFCSKLDMVSFSSSEEEFEMELGRLLRLLPEEMRRKVTEHEELHQLIEVVMDLGRKPLARFPSGDFVLSDHLITVDDLEHATSLVGDFAIDNRAGISRTLHRISAIRNRKGAVIGLTCRVGRAVSGSAKLLQDLVKDGSSLLLIGPPGVGKTTIIRDIARMLANEYNKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDSDMQHKVLIEAVENHMPQVIVIDEIGTKLEAAAASTIAQRGIQLVATAHGITIENLVQNPSLEMLVGGIQSVTLGDEEANRRGVQKSVLERKGPSTFDCAVEIISRLELRVHSSLEATVDAILSGRSPRYQICKLNEGVIDDTLQSDPIAYDSFVKKSVDTIEGISPWNNEKLTPDRNIAKVSQSDRENSYDKPPLCLFLYGV	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02409	459	FunFam	uncharacterized protein ycf45 isoform X2	158	375	-	-
	Soca5g02409	459	Pfam	Sporulation stage III, protein AA	172	323	IPR045735	-
	Soca5g02409	459	PANTHER	KINASE-RELATED	72	405	-	GO:0009507(PANTHER)
	Soca5g02409	459	CDD	AAA	194	283	-	-
	Soca5g02409	459	Gene3D	-	173	378	IPR027417	-
	Soca5g02409	459	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	93	337	IPR027417	-
	Soca5g02409	459	SMART	AAA-5	193	324	IPR003593	GO:0016887(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02409	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:25712708	Soca5g02660	Soca-Chr5:29041661	dispersed
	Soca	Soca-Chr5:25712708	Soca5g02409	Soca-Chr5:25712708	tandem