Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02423	ATGGCTGATGATGGTGATAAAAAAGTGATTGAAGAGAAAAAGAATGATGATAAAAGCAAGAAAAACAAGAAGAAAAGAGGGATATTTTCAAGAATATGGAATGCAGTGTTTAGATCAAGAAGTGGAGATGATTTTGAAAAAAGATTGCAATTTATATCTAAAGAAGAAGCTACTCTTCTTTCTAGAATGAAAAGAAGATCTTTGAGATGGAGAATTACTGCTAGGAATTTGATCATCTTTTCTTTTCTTCTTGAGCTGGTTGCAGTGGGTTATGCTATAATGACAACAAGAACAGTAGACTTGGACTGGAAAATTAGATCATTACGAGTCTTTCCCATGTTTCTTTTGCCTGCTTTATCATTCGCTTTGTATTATGGACTTTCAAGCTTCACAAAATACTGTGATCGCAGGGATCAGAAAACATTAGAGAACCTTCGGGCCGAAAGGCAAGCAAAAATTGACGAGCTTAAAGAGAGAACTAATTACTACATTACTCAGCAACTCATTCAGAAATATGACTCCGATCCTGCCGCAAAAGCAGCTGCTGCGTCTGTTCTTGCATCCAAATTGGGTGCTGATTCAGGTCTGAAAGTATATCTTGGAGATGAGTCACAATTGAATCCATATGCTGCAGGGAAGAGCAGTGATGTTGAGGTACAACAATCTACTGGTGGTCTTCGGAAACGAAATCAATCAAACTCTAGATCACCTAGAAGCAATGCAGCCCCCCTTTCTGATCAAAATGAGCCTGCTGAGATTTCTCAACATGGTCAACTCGTTGTTGACCATCACAATCCTGCTGCTTTAGGAGGTCAAGATGGTGGTTGGATTGCTCGAATTGCTGCCTTGCTTGTGGGAGAAGACCCAACACAATCGTATGCACTTATATGTGGGAATTGTCATATGCATAATGGTCTTGCAAGAAAGGAGGAGTTCCCATTTATCACTTACTATTGTCCTCATTGCCATGCCTTGAATAAACCAAAGAACTCAGCACCTCCTTCAGATACAGTGCCCCCTGTTTCGGGTTCTCCAAAGATAGGAAGTGAAGATGTTAAGATGATTGAACAAATTAATGAGTTGGTGGGTGAAAAAGTATCTGCTGCTGCTAGCAGTCCCGTAGCAGCACCTGCAGTGGAAGAGAAAGAAACAGCGGAGGATCCTGCAAGTCATTAA	1176	40.48	MADDGDKKVIEEKKNDDKSKKNKKKRGIFSRIWNAVFRSRSGDDFEKRLQFISKEEATLLSRMKRRSLRWRITARNLIIFSFLLELVAVGYAIMTTRTVDLDWKIRSLRVFPMFLLPALSFALYYGLSSFTKYCDRRDQKTLENLRAERQAKIDELKERTNYYITQQLIQKYDSDPAAKAAAASVLASKLGADSGLKVYLGDESQLNPYAAGKSSDVEVQQSTGGLRKRNQSNSRSPRSNAAPLSDQNEPAEISQHGQLVVDHHNPAALGGQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEEFPFITYYCPHCHALNKPKNSAPPSDTVPPVSGSPKIGSEDVKMIEQINELVGEKVSAAASSPVAAPAVEEKETAEDPASH	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02423	391	MobiDBLite	consensus disorder prediction	329	349	-	-
	Soca5g02423	391	Pfam	Predicted integral membrane zinc-ribbon metal-binding protein	276	326	IPR019273	-
	Soca5g02423	391	PANTHER	ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK	21	364	IPR040115	GO:0071782(PANTHER)\|GO:0071786(PANTHER)\|GO:0071786(InterPro)
	Soca5g02423	391	MobiDBLite	consensus disorder prediction	211	254	-	-
	Soca5g02423	391	Coils	Coil	139	159	-	-
	Soca5g02423	391	MobiDBLite	consensus disorder prediction	1	18	-	-
	Soca5g02423	391	MobiDBLite	consensus disorder prediction	369	391	-	-
	Soca5g02423	391	MobiDBLite	consensus disorder prediction	1	24	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02423	K23292	endoplasmic reticulum junction formation protein lunapark

Event-related genes

Select	Gene_1	Gene_2	Event_name
	157092	Soca5g02423	Soca9g01135

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:25794472	Soca9g01135	Soca-Chr9:12799203	dispersed
	Soca	Soca-Chr2:39852420	Soca5g02423	Soca-Chr5:25794472	transposed
	Soca	Soca-Chr5:25794472	Soca5g02668	Soca-Chr5:29124756	wgd
	Soca	Soca-Chr5:25794472	Soca9g01134	Soca-Chr9:12799203	wgd