AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Soca5g02425 | ATGGCTGCTGCTTCTGCTGAACGCGAAAACTTCATCTATGTCGCCAAGCTCGCCGAGCAAGCTGAACGCTATGACGAGATGGTGGATGCAATGAAGAAAGTTGCGCAGTTGGATATCGAATTGACTGTTGAGGAGAGAAATTTGCTGTCAGTTGGATACAAAAATGTGGTGGGTTCACGTAGGGCATCATGGAGGATATTGTCTTCCATTGAGCAAAAAGAGGAGTCAAGAGGCAATGAAGTTAACGTAAAGCGGATTAAGGAATACAGGCAGAAGGTGGAAACAGAGCTGTCTGATATCTGTGGAGATATCATGACTGTGATTGATGAGCATCTGATTCCATCTTCCTCCGCTGGAGAATCCACTGTTTTCTACTACAAGATGAAAGGAGACTATTATAGGTACCTTGCAGAGTTCAAGTCTGGTAGTGACAAAAAAGAAGCAGCTGATCAGTCACTGAAGGCTTATCAGTTGGCTTCTACTGCTGCAGAGGAACTATCTCCTACTCATCCCATCCGATTGGGCTTGGCTTTGAACTTCTCTGTCTTCTATTATGAGATTATGAACTCTCCGGAAAGAGCCTGCCACCTTGCAAAACAAGCTTTTGATGAAGCAATCTCAGAGCTCGACTCTTTGAGTGAGGAATCATACAAAGATAGCACTTTGATTATGCAGCTCCTGAGGGATAACCTCACTTTGTGGACTTCTGACATTCCAGAGGATGGAGAAGACCAAAAGATGGAGATCACCAAATCTGGTGTAGAAGATGCAGAGTAA | 777 | 44.27 | MAAASAERENFIYVAKLAEQAERYDEMVDAMKKVAQLDIELTVEERNLLSVGYKNVVGSRRASWRILSSIEQKEESRGNEVNVKRIKEYRQKVETELSDICGDIMTVIDEHLIPSSSAGESTVFYYKMKGDYYRYLAEFKSGSDKKEAADQSLKAYQLASTAAEELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDQKMEITKSGVEDAE | 258 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Soca5g02425 | 258 | ProSitePatterns | 14-3-3 proteins signature 1. | 46 | 56 | IPR023409 | - | |
| Soca5g02425 | 258 | SMART | 1433-4 | 8 | 248 | IPR023410 | - | |
| Soca5g02425 | 258 | Coils | Coil | 14 | 34 | - | - | |
| Soca5g02425 | 258 | Coils | Coil | 195 | 215 | - | - | |
| Soca5g02425 | 258 | PIRSF | 14-3-3 | 2 | 247 | IPR000308 | - | |
| Soca5g02425 | 258 | FunFam | 14-3-3 protein epsilon | 4 | 248 | - | - | |
| Soca5g02425 | 258 | Gene3D | - | 1 | 250 | IPR036815 | - | |
| Soca5g02425 | 258 | PANTHER | 14-3-3 PROTEIN | 7 | 240 | IPR000308 | GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER) | |
| Soca5g02425 | 258 | MobiDBLite | consensus disorder prediction | 237 | 258 | - | - | |
| Soca5g02425 | 258 | ProSitePatterns | 14-3-3 proteins signature 2. | 217 | 236 | IPR023409 | - | |
| Soca5g02425 | 258 | Pfam | 14-3-3 protein | 15 | 235 | IPR023410 | - | |
| Soca5g02425 | 258 | PRINTS | 14-3-3 protein zeta signature | 154 | 180 | IPR000308 | - | |
| Soca5g02425 | 258 | PRINTS | 14-3-3 protein zeta signature | 208 | 237 | IPR000308 | - | |
| Soca5g02425 | 258 | PRINTS | 14-3-3 protein zeta signature | 120 | 142 | IPR000308 | - | |
| Soca5g02425 | 258 | PRINTS | 14-3-3 protein zeta signature | 40 | 69 | IPR000308 | - | |
| Soca5g02425 | 258 | PRINTS | 14-3-3 protein zeta signature | 89 | 113 | IPR000308 | - | |
| Soca5g02425 | 258 | PRINTS | 14-3-3 protein zeta signature | 181 | 207 | IPR000308 | - | |
| Soca5g02425 | 258 | SUPERFAMILY | 14-3-3 protein | 7 | 237 | IPR036815 | - | |
| Soca5g02425 | 258 | MobiDBLite | consensus disorder prediction | 239 | 258 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Soca5g02425 | K06630 | 14-3-3 protein epsilon |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Soca | Soca-Chr1:33055164 | Soca5g02425 | Soca-Chr5:25878234 | dispersed | |
| Soca | Soca-Chr4:46293980 | Soca5g02425 | Soca-Chr5:25878234 | dispersed | |
| Soca | Soca-Chr5:25878234 | Soca9g01929 | Soca-Chr9:21776507 | dispersed | |
| Soca | Soca-Chr2:29454831 | Soca5g02425 | Soca-Chr5:25878234 | transposed | |
| Soca | Soca-Chr4:72615223 | Soca5g02425 | Soca-Chr5:25878234 | transposed | |
| Soca | Soca-Chr5:25878234 | Soca5g02670 | Soca-Chr5:29223552 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Soca9g01929 | ACH | 6 | 256 | 14-3-3 family | AT1G26480 | 85.259 | 2.23e-162 | 449.0 | |
| Soca1g02962 | ACH | 6 | 248 | 14-3-3 family | AT1G26480 | 86.42 | 5.14e-159 | 441.0 | |
| Soca4g04184 | . | 6 | 257 | 14-3-3 family | AT2G42590 | 77.075 | 4.80e-143 | 400.0 | |
| Soca5g02425 | . | 2 | 263 | 14-3-3 family | AT2G42590 | 75.954 | 8.94e-148 | 412.0 | |
| Soca7g03504 | ACH | 2 | 252 | 14-3-3 family | AT5G38480 | 88.446 | 2.02e-168 | 464.0 | |
| Soca4g02005 | . | 7 | 266 | 14-3-3 family | AT1G35160 | 81.992 | 3.12e-158 | 438.0 | |
| Soca4g02026 | . | 30 | 242 | 14-3-3 family | AT2G42590 | 45.089 | 5.45e-65 | 204.0 | |
| Soca4g02027 | . | 30 | 242 | 14-3-3 family | AT2G42590 | 45.089 | 1.23e-66 | 205.0 | |
| Soca4g02028 | . | 30 | 242 | 14-3-3 family | AT2G42590 | 45.089 | 1.23e-66 | 205.0 | |
| Soca4g02029 | ACH | 30 | 196 | 14-3-3 family | AT2G42590 | 52.976 | 8.89e-60 | 186.0 | |
| Soca6g02317 | ACH | 4 | 115 | 14-3-3 family | AT5G10450 | 81.25 | 1.21e-58 | 185.0 | |
| Soca6g02323 | . | 204 | 242 | 14-3-3 family | AT5G65430 | 87.179 | 5.18e-17 | 73.9 | |
| Soca6g02324 | . | 4 | 247 | 14-3-3 family | AT5G10450 | 84.016 | 8.04e-155 | 428.0 | |
| Soca6g02394 | ACH | 3 | 258 | 14-3-3 family | AT1G78300 | 87.109 | 1.18e-163 | 452.0 | |
| Socaptg000381l_1g00024 | . | 1 | 255 | 14-3-3 family | AT1G35160 | 86.328 | 2.68e-163 | 451.0 | |
| Socaptg000381l_1g00304 | . | 1 | 263 | 14-3-3 family | AT2G42590 | 77.947 | 1.41e-152 | 424.0 | |
| Soca1g07791 | . | 49 | 144 | 14-3-3 family | AT1G35160 | 83.333 | 4.99e-55 | 172.0 | |
| Soca7g01509 | . | 2 | 262 | 14-3-3 family | AT1G35160 | 84.351 | 2.64e-163 | 451.0 | |
| Soca7g01702 | ACH | 4 | 240 | 14-3-3 family | AT5G65430 | 66.667 | 1.04e-107 | 308.0 | |
| Soca3g02153 | ACH | 3 | 254 | 14-3-3 family | AT3G02520 | 88.889 | 1.36e-165 | 457.0 | |
| Soca5g02670 | . | 2 | 263 | 14-3-3 family | AT2G42590 | 75.954 | 8.94e-148 | 412.0 | |
| Soca3g02980 | . | 1 | 262 | 14-3-3 family | AT1G35160 | 85.171 | 4.07e-163 | 451.0 | |
| Soca4g02284 | . | 93 | 242 | 14-3-3 family | AT4G09000 | 24.026 | 1.97e-08 | 52.0 | |
| Soca4g02280 | . | 92 | 197 | 14-3-3 family | AT1G26480 | 28.302 | 4.61e-06 | 42.7 | |
| Soca2g01524 | . | 22 | 125 | 14-3-3 family | AT1G22300 | 44.231 | 4.07e-18 | 73.9 |