Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02427	ATGACTTCTTTCCTTGTATTTTTGCTATGTTTTCAAGCATTTTCTTCCATTTCAAAAGCTGTTGTGCCTGCTTCAGACACATTCACATATGTAAATGAAGGCGATTTTGGTGACTACATCGTCGAATACGATGCCAATTATCGTGCACTTAATCCTTTCAACAGCCCTTTCCAACTTTGCTTTTATAACACAACCCCTAATGCATTCACTTTGGCTCTACGTATGGGCACGGTTCGATCCGAGTCACTCATGCGTTGGGTTTGGGAAGCCAACAGGGGCAACCCAGTTCGTGAAAATGCCACCCTGACGTTCGGCACCAATGGGAACCTTGTCCTGGCTGATGCTGACGGTCGGGTGGCATGGCAAACCAACACAGCCAACAAGGGCGTTGTTGGTTTTCAAGTGCTTCCCACCGGTAACATGGTTCTTCATGACGGGAAGGGTAATTTTATATGGCAAAGCTTTGATTCACCAACGGATACACTCTTAGTTGGTCAATCTCTTAAAGCTAGTGGTGTCAATAAGCTTGTGAGCCGGGCTTCGGAGATGAATAATATAGACGGATCTTATAGTTTGGTGATGGAGCCAAAAGGGTTAGCCTTGTATTACAAGAGCCCGAATTCACCTCGACCAATGTTGTATTGGTCATCTAGCGAATGGTTCACTATTGACAAGGGTAGCTTGACCAATTTAACTCTAACCTCGGTCCCGGATACTGATGAAGGTTTTCTTTATTACTTAACTTTCATTTACTTTGTCACAAACCCCTCTTCTGATTCAAACCGAAACATGGCCTATTCTCGGTACAATAACACATTATCGTACCTTCGTCTAGGGATAGATGGAAACCTTAGATTCTTCACGTATAACCCGAATGTGCAAGGGGTTGCGTGGGAAAATGTGTACACGTTTCTTGATAGGGATTCGATGGAAGGCGAGTGTCAGTTACCCGAACGATGTGGGAAATTTGGACTATGTGAAGACAGCCAATGTGTGGCATGCCCAACCCCGAATGGGCTTAGCGGATGGAGTAAAGATTGTGATGTAAAAAAGGTGACATCTTGCAAGGCTAGTGACTTTGGGTACTATAAGCTTCAAGGGGTTGATCATTTTATGATTAAGTACACCAGAGGAGATGGCGCAACGAAACAAAGCGATTGTGAAACCAAATGCACAAAAGATTGCAAGTGCATGGGGTATTTCTATCACACGGATCAATCGAGGTGTTGGATTGCTTACGACTTGAAAACGTTAACACGAGTCGGAAACTCGACTCATTTGGCTTATATCAAGACACCGAACAAGTAG	1308	44.04	MTSFLVFLLCFQAFSSISKAVVPASDTFTYVNEGDFGDYIVEYDANYRALNPFNSPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLTFGTNGNLVLADADGRVAWQTNTANKGVVGFQVLPTGNMVLHDGKGNFIWQSFDSPTDTLLVGQSLKASGVNKLVSRASEMNNIDGSYSLVMEPKGLALYYKSPNSPRPMLYWSSSEWFTIDKGSLTNLTLTSVPDTDEGFLYYLTFIYFVTNPSSDSNRNMAYSRYNNTLSYLRLGIDGNLRFFTYNPNVQGVAWENVYTFLDRDSMEGECQLPERCGKFGLCEDSQCVACPTPNGLSGWSKDCDVKKVTSCKASDFGYYKLQGVDHFMIKYTRGDGATKQSDCETKCTKDCKCMGYFYHTDQSRCWIAYDLKTLTRVGNSTHLAYIKTPNK	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02427	435	Pfam	S-locus glycoprotein domain	226	339	IPR000858	GO:0048544(InterPro)
	Soca5g02427	435	CDD	PAN-AP-plant	354	433	-	-
	Soca5g02427	435	SUPERFAMILY	alpha-D-mannose-specific plant lectins	66	216	IPR036426	-
	Soca5g02427	435	FunFam	Os04g0303100 protein	77	211	-	-
	Soca5g02427	435	Pfam	D-mannose binding lectin	87	173	IPR001480	-
	Soca5g02427	435	PIRSF	SLG	1	435	IPR035446	-
	Soca5g02427	435	ProSiteProfiles	Bulb-type lectin domain profile.	25	156	IPR001480	-
	Soca5g02427	435	CDD	B-lectin	41	158	IPR001480	-
	Soca5g02427	435	Gene3D	-	24	157	IPR036426	-
	Soca5g02427	435	SMART	blect-4	41	158	IPR001480	-
	Soca5g02427	435	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5	49	433	IPR051343	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02427	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:25922763	Soca5g02673	Soca-Chr5:29359193	dispersed
	Soca	Soca-Chr5:25922763	Soca5g02428	Soca-Chr5:25952642	tandem
	Soca	Soca-Chr5:25922763	Soca5g02672	Soca-Chr5:29316017	wgd