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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02430 ATGGACTTCCAGAGGTTCTATGAAACATGGTATGAGCAACTCCATGACCAAATCCGCCACCTCACAAAAGCCCCTCGTCCACCCACCACCGACGACCACGATGAACAACTCACCCAACTTGTTAACAAAGTCATGTCCCATTTCGCTGAATTCTACAGAGTGAAGTCACTTGCCGTAAACCAAGATGTGTTGTCTATATTTTCCGCAAAGTGGTCCACCACCCTGGAACGATCCCTTCTTTGGATCGCGGGGTGGCGGCCCACCACGGCTTTCCATCTTATTTATACGGAGTCTAGTATCCTTTTTGAGTCAAGGCTGGTAGACATCTTACAAGGGTTGCGTACCGGCGACCTAGGTGACCTGTCGCCGGCACAGTTTACCCATGTCAGTGTGTTGCAGTGTGAAACTGTCCGACAAGAAAACGCCATCACCGGTGAACTTTCGGAGTGGCAGGCATGCAACTTGATTTATTTATTTTAA 480 48.96 MDFQRFYETWYEQLHDQIRHLTKAPRPPTTDDHDEQLTQLVNKVMSHFAEFYRVKSLAVNQDVLSIFSAKWSTTLERSLLWIAGWRPTTAFHLIYTESSILFESRLVDILQGLRTGDLGDLSPAQFTHVSVLQCETVRQENAITGELSEWQACNLIYLF 159
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02430 159 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 2 152 IPR051886 -
Soca5g02430 159 ProSiteProfiles DOG1 domain profile. 1 159 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Soca5g02430 159 Pfam Seed dormancy control 18 96 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02430 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:26002459 Soca8g01750 Soca-Chr8:22583148 dispersed
Soca Soca-Chr5:26002459 Soca3g04560 Soca-Chr3:69763346 transposed
Soca Soca-Chr5:26002459 Soca3g04211 Soca-Chr3:61650657 transposed
Soca Soca-Chr5:26002459 Soca3g04429 Soca-Chr3:66108018 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Soca6g01810 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 56.473 1.14e-169 485.0
Soca6g01811 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 56.027 5.08e-166 476.0
Soca1g06788 ACH 1 226 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 64.103 1.18e-101 295.0
Soca3g00754 . 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.78 2.08e-115 337.0
Soca3g01304 . 213 320 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 39.815 1.28e-16 77.8
Soca9g04699 . 245 275 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 67.647 8.15e-06 43.9
Soca9g02513 . 1 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 36.709 1.04e-22 88.6
Soca9g02210 ACH 23 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 54.422 6.37e-40 132.0
Soca1g03272 ACH 58 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 55.455 2.33e-36 123.0
Soca1g03273 . 33 169 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G13600 45.324 3.08e-29 104.0
Soca7g00708 . 1 306 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G31370 61.587 2.83e-119 346.0
Socaptg000040l_1g00216 . 26 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 48.615 6.21e-77 237.0
Soca1g00589 . 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 61.568 0.0 592.0
Soca4g01600 ACH 25 154 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 71.538 1.19e-58 178.0
Soca6g01549 . 1 441 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 41.72 2.82e-79 249.0
Soca8g01652 . 19 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G31370 60.18 1.82e-124 362.0
Soca8g01750 . 121 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 28.27 5.59e-17 77.8
Soca1g07089 . 3 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 56.167 0.0 528.0
Soca5g01539 . 118 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 25.238 4.20e-13 65.5
Soca5g01156 ACH 11 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 48.284 1.94e-102 306.0
Soca5g01926 . 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 45.758 1.52e-69 216.0
Soca5g02430 . 112 217 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 33.028 1.94e-14 67.4
Soca5g02097 ACH 30 415 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 47.597 7.82e-130 380.0
Soca5g02098 ACH 117 415 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 55.814 1.75e-116 340.0
Soca5g02401 . 1 308 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 55.828 3.15e-99 294.0
Soca8g00458 . 18 144 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 39.062 2.48e-19 76.6
Soca8g00489 . 38 290 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 38.346 5.00e-16 75.1
Soca4g02544 ACH 20 151 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 48.905 6.68e-35 117.0
Soca6g02670 ACH 9 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.674 3.77e-41 134.0
Soca1g02672 . 121 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.083 7.49e-16 74.7
Soca9g01320 ACH 8 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 45.81 1.58e-43 141.0
Soca6g03000 ACH 12 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 36.768 3.71e-58 192.0
Soca6g03001 ACH 12 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 36.916 3.36e-57 189.0
Soca6g03002 ACH 21 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 40.842 5.33e-55 184.0
Soca1g03468 . 52 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G38800 51.961 9.51e-29 102.0
Soca1g03467 . 58 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 55.455 8.26e-36 122.0
Soca2g04145 ACH 9 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 52.5 1.21e-46 148.0
Soca7g01454 . 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 37.004 7.72e-67 215.0
Soca7g01206 . 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 41.004 3.99e-31 114.0
Soca7g02357 . 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 53.866 6.06e-112 328.0
Soca7g02356 . 1 227 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 61.317 5.16e-88 263.0
Soca1g07344 ACH 3 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 56.167 0.0 530.0
Soca4g04890 . 1 376 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 59.843 2.73e-139 400.0
Soca4g04892 . 1 376 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 59.843 2.73e-139 400.0
Soca4g04891 . 1 376 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 59.843 2.73e-139 400.0
Soca3g04560 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.455 1.02e-176 490.0
Soca2g03975 . 5 427 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34000 33.871 1.77e-48 170.0
Soca2g03974 . 22 361 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 41.644 4.96e-62 201.0
Soca5g00221 . 1 145 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 55.705 7.27e-54 165.0
Soca5g00085 ACH 11 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 48.522 1.09e-102 307.0
Soca6g00588 . 81 359 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 38.644 1.49e-41 146.0
Soca8g05078 ACH 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 64.264 1.14e-146 416.0
Soca8g05080 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 64.264 1.14e-146 416.0
Soca8g05079 ACH 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 64.264 1.14e-146 416.0
Soca8g05081 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 64.264 1.14e-146 416.0
Soca8g05034 . 51 721 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 47.606 5.51e-159 475.0
Soca5g03395 ACH 173 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 45.312 2.20e-24 100.0
Soca7g02266 . 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 52.835 3.53e-109 321.0
Soca7g02267 . 1 198 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 57.009 2.13e-67 209.0
Soca3g04429 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.455 4.51e-177 491.0
Soca7g01139 . 208 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 46.154 7.13e-15 68.6
Soca7g03516 ACH 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 56.012 4.81e-113 329.0
Soca4g01881 . 64 151 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 43.182 7.15e-14 62.4
Soca4g01908 . 113 307 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 29.798 1.32e-15 72.4
Soca4g02161 . 12 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 47.478 3.60e-82 251.0
Soca9g03912 . 1 226 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 53.543 4.03e-80 239.0
Soca9g03910 . 20 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 54.113 9.06e-78 234.0
Soca9g03908 ACH 29 175 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 64.667 1.99e-64 197.0
Soca4g00859 ACH 1 303 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 54.598 6.91e-110 321.0
Soca4g00943 . 31 111 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G18160 51.852 4.42e-24 89.4
Socaptg000381l_1g00321 . 118 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 24.779 2.37e-08 52.4
Socaptg000381l_1g00322 . 118 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 26.19 1.14e-10 59.3
Socaptg000381l_1g00268 . 1 310 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 49.39 4.95e-81 247.0
Soca2g05185 . 37 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 48.627 1.41e-62 198.0
Soca2g05278 . 1 389 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.606 1.81e-155 442.0
Soca1g07799 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 74.622 1.78e-173 482.0
Soca5g00671 . 1 145 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 55.705 7.27e-54 165.0
Soca8g02887 . 302 480 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 73.184 8.40e-84 257.0
Soca8g02888 . 302 450 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 71.812 3.61e-65 207.0
Soca4g01206 ACH 25 154 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 71.538 1.19e-58 178.0
Soca2g05081 . 1 389 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.606 1.81e-155 442.0
Soca2g04993 . 37 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 48.627 1.07e-62 198.0
Soca2g04086 ACH 9 146 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.36 4.57e-43 138.0
Soca2g04085 ACH 9 146 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.36 4.57e-43 138.0
Soca2g04087 . 9 146 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.36 1.24e-43 140.0
Soca5g03078 . 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 46.279 1.89e-90 278.0
Soca5g03079 . 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 46.279 2.57e-90 278.0
Soca5g03333 . 146 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 48.023 5.50e-35 125.0
Soca2g03041 . 5 427 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34000 33.41 2.57e-47 167.0
Soca2g03043 . 51 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 41.193 8.38e-59 191.0
Soca2g03042 . 51 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 42.21 2.87e-59 192.0
Soca7g03337 ACH 7 111 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 40.952 1.28e-18 75.5
Soca7g03103 . 60 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 71.296 8.22e-51 160.0
Soca3g02168 ACH 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 44.282 1.81e-75 233.0
Soca3g02078 ACH 1 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 39.157 9.87e-28 100.0
Soca5g02964 ACH 24 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 52.555 6.07e-41 133.0
Soca5g02650 . 1 308 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 55.521 7.59e-99 293.0
Soca7g03810 ACH 21 358 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 49.724 7.20e-84 259.0
Soca7g03809 ACH 21 358 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 49.724 7.20e-84 259.0
Soca9g02642 . 4 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 48.98 1.48e-97 293.0
Soca9g02643 ACH 4 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 48.608 1.09e-95 288.0
Soca9g02644 . 4 255 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 45.059 4.18e-49 164.0
Soca3g04213 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.455 4.51e-177 491.0
Soca3g04212 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.455 4.51e-177 491.0
Soca3g04211 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.455 4.51e-177 491.0
Soca4g03957 ACH 1 259 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 53.759 1.36e-84 251.0
Soca4g04000 ACH 31 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 48.638 3.10e-127 379.0
Soca4g00737 ACH 5 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 40.373 2.38e-25 94.4
Socaptg000718l_1g00278 . 40 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 59.712 4.04e-48 152.0
Soca9g01740 ACH 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 50.538 7.67e-22 92.8
Soca4g03559 . 9 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 58.244 3.97e-156 448.0
Soca4g03558 . 88 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 69.355 3.75e-156 445.0
Soca4g03460 ACH 68 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G13600 61.905 2.40e-35 120.0
Soca4g03459 ACH 16 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 51.923 1.75e-41 136.0
Soca1g01209 ACH 25 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 75.194 9.35e-61 184.0
Soca6g02065 . 16 248 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 42.164 2.84e-49 162.0
Soca3g04732 . 138 467 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 34.483 3.10e-36 137.0
Soca1g06345 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 74.32 3.18e-173 481.0
Soca5g00301 . 41 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 27.407 9.08e-13 66.6
Soca5g00302 . 41 266 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 30.085 2.00e-16 76.3
Soca7g00693 . 85 270 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 49.51 1.18e-49 162.0