AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02432 ATGGAAGGTTTAAGGCTAGAAGACACGATAAGGAAGGCTGGAGAAAAGTATAGGTCATTTCTCCATGAAGAAGCAGAGAACAACACCAATTGGAGACACGGCGGTCCACCCATTTACGATGTCGTAACAAACTGTTTGAAGACGGCCGAACCAAGTAATTACCAGCTGGTTTTTATGTGTGTTACATGCGTTTGGGAAAAGGGATCATTAGAAGAAACCGTACAAAATGCAATAAAATCATGGGAGATGGAACTAAGCCACAAGACTCGCATACAAGACTTCAAGACTATCAATCCTGAAAAGTTCATGCTTATTGTCAACGGCAGGGAGGGTTTATCAGCCGAGGAAACATTGAAGATAGGGAGTTATAACGCCTTACTTAAGAATACACTTCCTGAAGAATACAAGTATTACAAAGCTGAAGAAGAAACCTTTGAATCGTCTCATGATGTTTTCCGATCGGCCTTTCCTCGTGGATTCGCATGGGAAGTGATAAGCGTCCATTCCGGACCACCTGTGATAACGTATAAGTTCAGGCATTGGGGTTACTTTGAAGGTCCATACAAAGGCCATGCCCCTACTGGCGAAATGGTTGATTTCTATGGAATGGGCATCCTCAAGGTTGACGAATCATTGAGAGCCGAAGATGTCGAGATTTATTATGATCCAGCTGATCTTATCTCAAAATTGATCAAGGGACCGTTGATCTCTGGAGACCAAGACGTTGTCGTGGATACTTCTGCGGCACACACGGGCAGTTGCCCCTACCAGAATTAA 777 43.76 MEGLRLEDTIRKAGEKYRSFLHEEAENNTNWRHGGPPIYDVVTNCLKTAEPSNYQLVFMCVTCVWEKGSLEETVQNAIKSWEMELSHKTRIQDFKTINPEKFMLIVNGREGLSAEETLKIGSYNALLKNTLPEEYKYYKAEEETFESSHDVFRSAFPRGFAWEVISVHSGPPVITYKFRHWGYFEGPYKGHAPTGEMVDFYGMGILKVDESLRAEDVEIYYDPADLISKLIKGPLISGDQDVVVDTSAAHTGSCPYQN 258
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02432 258 PANTHER PATHOGENESIS-RELATED FAMILY PROTEIN 10 256 IPR053218 -
Soca5g02432 258 SUPERFAMILY NTF2-like 144 229 IPR032710 -
Soca5g02432 258 Gene3D - 125 231 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02432 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:26008402 Soca5g02432 Soca-Chr5:26008402 tandem
Soca Soca-Chr5:26008402 Soca5g02433 Soca-Chr5:26008402 tandem