AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02487 ATGGTTTTATTGAGGGTAAATATCAATATGAGCTTATTATTCTTGGTATTTATTATTAGCGTTGTTTCATTGTTAGTAAGGATTGATGGAGTTGCTGCATATGGGTGTAATTTGTTCCAAGGGAATTGGGTGTTGGACCCATCCTACCCAATGTACAACGAGTCGACCTGCCCGTTTCTTGAAAAAGAGTTCAACTGCGTAAATAATGGCCGCCCCGACCGGTTTTATCTTAAATATAGATGGCAACCGCACGGCTGCCACATATCCAGATTTGATGGACAATACTTCTTAGAAAAACTAAGAGGGAAAACCATAATGTTTGTAGGAGACTCGCTTAGCCGAAACCAGTGGTTGTCGATGCTATGCATGATCCACTCGTCGATGCCAAGTACAAATTATGCGGTCAATATCTCGTTGATTCAAGATATGACCACTTATACCTTTACGGATTATAAAGTAAAAGTCATATACCATCACAACTTGTACCTAGTAGATATAGTGAAGCAAAGATTTGGGAGGGTGTTGAAGTTAAATACATTGACAGCTGGCAAATACTGGTTGGATGTTGACCACCTGGTGTTCAACACGTGGCATTGGTGGAACCGCAGAGGAGCCAGCCAACCATTCGATTACATACAAGACGGGAGGCGTATATATAAGGACATGGATCGCGTGGTCGCTTTTGGGAAGGCGATCGCTACATGGGGTCAATGGGTTGATGCTAACGTTGTTCCGAATAAAACAAAAGTATTCTTTCAAGGGATATCGCCGTCTCATTACAATGGGACTGATTGGGGAGATCCAAAGGCAAAATCCTGCTCTGGAGAAAAAATTCCTCTTCTAAAATCCACTTATCCGGGAGTGTCACCTCCGGCATTGGCAGTCCTTAAGACCGCGCTCAAAGGCATCAAGAAACCAGTCACTTTGCTCGATGTAACCAACCTTTCTCTACTACGAAAAGATGGCCATCCGTCGTCTTATGGTCTAGGGGTGGTGGATTGCAGCCACTGGTGCTTGGCTGGAGTTCCAGATACATGGAATGTTTTACTTTACAACCTTATGCTTTAA 1068 43.26 MVLLRVNINMSLLFLVFIISVVSLLVRIDGVAAYGCNLFQGNWVLDPSYPMYNESTCPFLEKEFNCVNNGRPDRFYLKYRWQPHGCHISRFDGQYFLEKLRGKTIMFVGDSLSRNQWLSMLCMIHSSMPSTNYAVNISLIQDMTTYTFTDYKVKVIYHHNLYLVDIVKQRFGRVLKLNTLTAGKYWLDVDHLVFNTWHWWNRRGASQPFDYIQDGRRIYKDMDRVVAFGKAIATWGQWVDANVVPNKTKVFFQGISPSHYNGTDWGDPKAKSCSGEKIPLLKSTYPGVSPPALAVLKTALKGIKKPVTLLDVTNLSLLRKDGHPSSYGLGVVDCSHWCLAGVPDTWNVLLYNLML 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02487 355 Pfam PMR5 N terminal Domain 35 87 IPR025846 -
Soca5g02487 355 Pfam GDSL-SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 89 352 IPR026057 GO:0016740(InterPro)
Soca5g02487 355 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 18 353 IPR029962 GO:0005794(PANTHER)|GO:0016413(PANTHER)|GO:0016413(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02487 K23877 xyloglucan O-acetyltransferase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:16823444 Soca5g02487 Soca-Chr5:26894541 dispersed
Soca Soca-Chr5:26894541 Soca9g01181 Soca-Chr9:13231181 dispersed
Soca Soca-Chr5:26894541 Soca5g02701 Soca-Chr5:29754726 wgd