Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02488	ATGTCATTGTCACCAACATTGTTGGAAACTTTACTGATAGCCTCCCCTGATGGCCAAATCACCGCCCTTGATCCATACGCTGGAACTGTCTTAGCTCGCTTCTATGGTAGCCGATGTCCTTGTAATAGCATAACCGTTGTTGGAAACAATCAATTTGCTGTTTCTCATGTTTCGGAGCAGACCGGTGCAGGTTGTGTTAATCTGTATTACTGGTGGTCAAAGTCTTGTGCACAAACTATCCCTTTCCCTGAACCTGTAGTTCCGCTTGCTGCCATGGTAGACGGGTCATATCTGTTTGCGGGCGGAATTTCAGGTCACATACATTCATTATCGGTACCTTCAGGAGAGCTTATCCAGTCATTTTCAGCTCATGAGAATCCTGTGTCCTGCCTTGCCATCAGTTGTGATGGATCGTTGCTTCTCTCAGGGAGTGATGATGGAACAATCGCTGTTACTCCTGTATTAGTGCTTCTAGATTCTACGTTTGATATGGAATCGAGAATTTCTGGTTTCAACAAATTTATTGGGCATGAATCATCCGTGACAGGATTAAGCACTGGCTTGGGACCGTGCAGTGGCATTATGATCTCCAGCTCGTTGGACTGGACTTGCAAGGTATGGAACGTTGTGAATGGAATTCACCTCCAAACGGTGAACTTCCCAGGGGAGATGTTGTGCACGGTGTTGGATCCATCAGAGACAGAGTTTTACGCTGTAGGGGCAGATGGAATGATATACAAAAAAAAGCTTAAAGTGGAGACAAAAAAGCAACTGGTGGAAGAAAGAGAGACTATAGCGTGGGGCAGGATGCAGAGCGGAGCGGTAGCGGCTATCCAAATGTCAAATTACGGAAGAACTCTTTTGACAGTTTCTGAGAATGGAAGGATATGTGCTTGGGAAACAGAAAGTGGCAAGATGACAAGTAGTTTTAGCAAGAAGACTGGAGCTGTTAGTGGAGTTGCACTGGTGAAAGGTGGTGGGTGGTTTGGAAAAAGAGGGTCCGAAAAAGGAGAATTGAATGGTTATGGCGGCTGGGAGGAAGTGGGTAAGGCGGTGAAGGAGGTTGCGGAAATGGAAGAGGCTTTGAAAGTGGTGGCAGAAGACAGGGGAAGGGAGATTAGTAACCTTGAATCAGCGATTGAGGTTAATGAAAAACTGCTTAACCTCATGCTAAAGGAAGCCAAGGCGATTGCCAAATTTGAGGAATCCGAACAGAACTTGAAAATTAAAAATTGA	1236	45.47	MSLSPTLLETLLIASPDGQITALDPYAGTVLARFYGSRCPCNSITVVGNNQFAVSHVSEQTGAGCVNLYYWWSKSCAQTIPFPEPVVPLAAMVDGSYLFAGGISGHIHSLSVPSGELIQSFSAHENPVSCLAISCDGSLLLSGSDDGTIAVTPVLVLLDSTFDMESRISGFNKFIGHESSVTGLSTGLGPCSGIMISSSLDWTCKVWNVVNGIHLQTVNFPGEMLCTVLDPSETEFYAVGADGMIYKKKLKVETKKQLVEERETIAWGRMQSGAVAAIQMSNYGRTLLTVSENGRICAWETESGKMTSSFSKKTGAVSGVALVKGGGWFGKRGSEKGELNGYGGWEEVGKAVKEVAEMEEALKVVAEDRGREISNLESAIEVNEKLLNLMLKEAKAIAKFEESEQNLKIKN	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02488	411	Gene3D	-	164	330	IPR015943	GO:0005515(InterPro)
	Soca5g02488	411	ProSiteProfiles	Trp-Asp (WD) repeats profile.	121	151	IPR001680	GO:0005515(InterPro)
	Soca5g02488	411	ProSitePatterns	Trp-Asp (WD) repeats signature.	195	209	IPR019775	-
	Soca5g02488	411	SMART	WD40-4	73	111	IPR001680	GO:0005515(InterPro)
	Soca5g02488	411	SMART	WD40-4	114	153	IPR001680	GO:0005515(InterPro)
	Soca5g02488	411	SMART	WD40-4	167	208	IPR001680	GO:0005515(InterPro)
	Soca5g02488	411	SMART	WD40-4	261	300	IPR001680	GO:0005515(InterPro)
	Soca5g02488	411	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	121	151	-	-
	Soca5g02488	411	Pfam	WD domain, G-beta repeat	115	150	IPR001680	GO:0005515(InterPro)
	Soca5g02488	411	Pfam	WD domain, G-beta repeat	173	208	IPR001680	GO:0005515(InterPro)
	Soca5g02488	411	PANTHER	WD-REPEAT PROTEIN 18	9	324	IPR045227	GO:0005656(PANTHER)\|GO:0006261(PANTHER)\|GO:0006364(PANTHER)\|GO:0097344(PANTHER)
	Soca5g02488	411	SUPERFAMILY	WD40 repeat-like	10	329	IPR036322	GO:0005515(InterPro)
	Soca5g02488	411	Gene3D	-	2	163	IPR015943	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02488	K14829	pre-rRNA-processing protein IPI3

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:26903558	Soca5g02702	Soca-Chr5:29762347	wgd