AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Soca5g02518 | ATGGTGGTTGTCCCAAAACCTCCTATTGAACAGTTCTTATTCAAAGCTACTAAACCAAACACTACTACTAGCCCATTAATCATTCCTCCTATTCCTCTCATTGACCTCTCTAAACCTGAATCCAAACACCATCTTGTTAAAGCTTGTCAAGATTTTGGATTCTTTAAAGTTGTTAATCATGGGGTTCCCACAAAATTTATTAATAAACTTGAAACAGAAGCTGTCAAGTTCTTTGCTTCACCACCTTCTGTCAAGGAACATTTCGGGCCGCCCAACCCATTCGGTTATGGAAACAAAAACATTGGCCGAAATGGTGATTTTGGGTGGGTCGAATACCTCCTTCTTAACACCAAACCCGAATCAAATTACCCGGAAAATTTCGAGGATGTTGTGAATGATTATGTGACATCAGTGAAGAAAATGGCATGTGAAATATTGGAATTATTGGCAGATGAAATGAAATTACAGCCAAGAAATGTGTTCAGTAAGCTGTTAAAAGATGAACAGAGTGACTCTGTTTTCAGGGTCAATCATTATCCACCATGCCCTGAGTTTCAAGAAAATGAAAAAAGTGGGGAAAAATTGGTGGGCTTTGGAGAACATACTGACCCACAGATTATTTCAGTTTTGAGATCAAATAATACTTCTGGGCTTGAAATTTCATTAAGAGATGGAAGTTGGATGTCTGTTCCTCCTGATTCCGATTCCTTTTTCATCAATGTTGGTGACTCTTTACAGGTGATGACCAATGGAAGATTCAAGAGTGTGAAGCATAGGGTGGTTGCAAATGGTACCAAAAGTAGGGTGTCAATGATCTATTTTGGAGGACCACCATTGAGTGAAAAGATTGCACCATTGCCTTCACTTATGCAAGGAGAAGAGCATAGTTTGTACAAGGAATTCACTTGGTTCGAATACAAGAAATCCGCATTCAATTCAAGATTGTCTGATAACAGGCTTGGCCTATTCGAAAAAATCGTTGCTTCTTAG | 990 | 38.89 | MVVVPKPPIEQFLFKATKPNTTTSPLIIPPIPLIDLSKPESKHHLVKACQDFGFFKVVNHGVPTKFINKLETEAVKFFASPPSVKEHFGPPNPFGYGNKNIGRNGDFGWVEYLLLNTKPESNYPENFEDVVNDYVTSVKKMACEILELLADEMKLQPRNVFSKLLKDEQSDSVFRVNHYPPCPEFQENEKSGEKLVGFGEHTDPQIISVLRSNNTSGLEISLRDGSWMSVPPDSDSFFINVGDSLQVMTNGRFKSVKHRVVANGTKSRVSMIYFGGPPLSEKIAPLPSLMQGEEHSLYKEFTWFEYKKSAFNSRLSDNRLGLFEKIVAS | 329 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Soca5g02518 | 329 | PANTHER | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | 30 | 308 | IPR050231 | GO:0009416(PANTHER)|GO:0016706(PANTHER)|GO:0045487(PANTHER)|GO:0052634(PANTHER) | |
| Soca5g02518 | 329 | FunFam | Gibberellin 2-beta-dioxygenase 1 | 9 | 316 | - | - | |
| Soca5g02518 | 329 | Pfam | 2OG-Fe(II) oxygenase superfamily | 171 | 275 | IPR044861 | - | |
| Soca5g02518 | 329 | Gene3D | - | 8 | 317 | IPR027443 | - | |
| Soca5g02518 | 329 | SUPERFAMILY | Clavaminate synthase-like | 25 | 317 | - | - | |
| Soca5g02518 | 329 | ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 169 | 277 | IPR005123 | - | |
| Soca5g02518 | 329 | Pfam | non-haem dioxygenase in morphine synthesis N-terminal | 31 | 122 | IPR026992 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Soca5g02518 | K04125 | gibberellin 2beta-dioxygenase [EC:1.14.11.13] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Soca | Soca-Chr5:27223662 | Soca9g01204 | Soca-Chr9:13487093 | dispersed | |
| Soca | Soca-Chr6:4979212 | Soca5g02518 | Soca-Chr5:27223662 | transposed | |
| Soca | Soca-Chr5:27223662 | Soca5g02730 | Soca-Chr5:30087298 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Soca3g00837 | . | 40 | 356 | GA20OX gene family | AT4G25420 | 34.675 | 1.10e-56 | 187.0 | |
| Soca3g00533 | . | 59 | 361 | GA20OX gene family | AT4G25420 | 31.715 | 9.22e-38 | 136.0 | |
| Soca9g04536 | . | 35 | 334 | GA20OX gene family | AT1G60980 | 33.882 | 9.75e-48 | 164.0 | |
| Soca9g02347 | . | 61 | 357 | GA20OX gene family | AT4G25420 | 26.885 | 8.25e-23 | 95.9 | |
| Soca7g04814 | ACH | 61 | 368 | GA20OX gene family | AT4G25420 | 25.321 | 2.75e-23 | 97.1 | |
| Soca7g04224 | . | 60 | 355 | GA20OX gene family | AT1G44090 | 30.537 | 2.31e-32 | 122.0 | |
| Soca7g04815 | ACH | 55 | 335 | GA20OX gene family | AT5G07200 | 27.273 | 2.45e-26 | 105.0 | |
| Soca7g04813 | ACH | 61 | 354 | GA20OX gene family | AT4G25420 | 25.084 | 9.76e-19 | 84.0 | |
| Soca8g04109 | . | 40 | 369 | GA20OX gene family | AT4G25420 | 30.06 | 4.74e-43 | 150.0 | |
| Soca4g01377 | . | 55 | 335 | GA20OX gene family | AT5G07200 | 28.622 | 8.51e-30 | 115.0 | |
| Soca4g04668 | . | 55 | 355 | GA20OX gene family | AT5G07200 | 26.688 | 3.72e-21 | 90.9 | |
| Soca1g04589 | . | 40 | 356 | GA20OX gene family | AT4G25420 | 32.628 | 9.18e-54 | 180.0 | |
| Soca1g05004 | . | 26 | 372 | GA20OX gene family | AT4G25420 | 69.628 | 0.0 | 513.0 | |
| Soca5g01478 | . | 61 | 335 | GA20OX gene family | AT4G25420 | 32.975 | 3.69e-47 | 162.0 | |
| Soca5g02518 | . | 63 | 366 | GA20OX gene family | AT1G44090 | 30.892 | 3.48e-39 | 140.0 | |
| Soca8g00449 | . | 39 | 359 | GA20OX gene family | AT4G25420 | 31.832 | 1.08e-44 | 155.0 | |
| Soca9g00638 | . | 58 | 368 | GA20OX gene family | AT5G07200 | 29.283 | 8.34e-28 | 109.0 | |
| Soca1g02362 | . | 66 | 364 | GA20OX gene family | AT4G25420 | 31.25 | 6.83e-46 | 157.0 | |
| Soca1g02525 | . | 56 | 358 | GA20OX gene family | AT4G25420 | 31.847 | 8.02e-42 | 147.0 | |
| Soca1g02524 | . | 53 | 372 | GA20OX gene family | AT5G07200 | 31.024 | 2.56e-40 | 143.0 | |
| Soca9g01408 | . | 38 | 352 | GA20OX gene family | AT4G25420 | 34.036 | 2.60e-54 | 181.0 | |
| Soca9g01407 | . | 38 | 293 | GA20OX gene family | AT4G25420 | 31.502 | 1.47e-36 | 132.0 | |
| Soca3g03752 | . | 62 | 295 | GA20OX gene family | AT4G25420 | 30.213 | 3.70e-32 | 120.0 | |
| Soca3g03816 | . | 231 | 285 | GA20OX gene family | AT5G51810 | 41.818 | 1.90e-11 | 57.0 | |
| Soca3g03885 | . | 42 | 117 | GA20OX gene family | AT5G51810 | 35.0 | 1.09e-10 | 55.5 | |
| Soca3g03815 | . | 34 | 346 | GA20OX gene family | AT5G51810 | 29.573 | 2.37e-38 | 138.0 | |
| Soca1g03991 | . | 61 | 327 | GA20OX gene family | AT5G51810 | 32.374 | 1.61e-31 | 119.0 | |
| Soca1g03990 | . | 184 | 327 | GA20OX gene family | AT5G51810 | 33.987 | 2.39e-16 | 75.5 | |
| Soca1g03992 | . | 61 | 327 | GA20OX gene family | AT5G51810 | 31.295 | 1.43e-30 | 117.0 | |
| Soca1g03655 | . | 30 | 357 | GA20OX gene family | AT4G25420 | 33.134 | 1.23e-42 | 150.0 | |
| Soca7g04098 | . | 63 | 355 | GA20OX gene family | AT1G44090 | 30.508 | 1.98e-31 | 119.0 | |
| Soca7g01398 | . | 32 | 356 | GA20OX gene family | AT4G25420 | 31.487 | 3.98e-48 | 164.0 | |
| Soca7g02399 | . | 12 | 371 | GA20OX gene family | AT1G60980 | 28.099 | 1.63e-41 | 147.0 | |
| Soca7g02562 | . | 1 | 371 | GA20OX gene family | AT5G51810 | 64.191 | 0.0 | 508.0 | |
| Soca7g02496 | . | 55 | 358 | GA20OX gene family | AT1G60980 | 33.758 | 4.88e-37 | 135.0 | |
| Soca7g02497 | . | 55 | 358 | GA20OX gene family | AT1G60980 | 33.758 | 3.14e-37 | 135.0 | |
| Soca7g02402 | . | 57 | 356 | GA20OX gene family | AT1G60980 | 28.758 | 1.81e-35 | 130.0 | |
| Soca7g02403 | . | 57 | 356 | GA20OX gene family | AT1G60980 | 28.758 | 1.81e-35 | 130.0 | |
| Soca9g01204 | . | 53 | 346 | GA20OX gene family | AT5G51810 | 31.148 | 1.36e-43 | 152.0 | |
| Soca6g00736 | . | 42 | 355 | GA20OX gene family | AT5G51810 | 35.016 | 9.34e-53 | 176.0 | |
| Soca6g00738 | . | 42 | 285 | GA20OX gene family | AT5G51810 | 36.032 | 1.13e-38 | 137.0 | |
| Soca6g00737 | . | 42 | 145 | GA20OX gene family | AT5G51810 | 37.383 | 1.98e-13 | 64.7 | |
| Soca6g00735 | . | 186 | 357 | GA20OX gene family | AT4G25420 | 38.953 | 2.47e-36 | 129.0 | |
| Soca6g00739 | . | 42 | 350 | GA20OX gene family | AT5G51810 | 32.698 | 7.11e-46 | 158.0 | |
| Soca6g00734 | . | 35 | 352 | GA20OX gene family | AT4G25420 | 28.955 | 9.22e-43 | 150.0 | |
| Soca8g03948 | . | 39 | 369 | GA20OX gene family | AT4G25420 | 29.97 | 4.49e-44 | 154.0 | |
| Soca5g01774 | . | 58 | 328 | GA20OX gene family | AT4G25420 | 32.727 | 3.32e-40 | 144.0 | |
| Soca7g01056 | . | 40 | 343 | GA20OX gene family | AT4G25420 | 29.968 | 6.87e-39 | 140.0 | |
| Soca9g04144 | . | 61 | 232 | GA20OX gene family | AT4G25420 | 26.437 | 1.14e-07 | 48.9 | |
| Soca8g00783 | . | 60 | 364 | GA20OX gene family | AT4G25420 | 32.492 | 1.67e-49 | 168.0 | |
| Soca4g02074 | . | 180 | 335 | GA20OX gene family | AT5G07200 | 29.114 | 4.16e-18 | 80.1 | |
| Soca6g00405 | . | 61 | 349 | GA20OX gene family | AT5G51810 | 30.333 | 4.99e-38 | 137.0 | |
| Soca4g00673 | . | 61 | 330 | GA20OX gene family | AT4G25420 | 31.081 | 8.71e-27 | 107.0 | |
| Soca4g00998 | . | 56 | 360 | GA20OX gene family | AT1G60980 | 33.119 | 4.98e-46 | 159.0 | |
| Socaptg000381l_1g00207 | . | 57 | 330 | GA20OX gene family | AT5G07200 | 34.629 | 4.83e-45 | 157.0 | |
| Socaptg000381l_1g00381 | . | 61 | 370 | GA20OX gene family | AT4G25420 | 30.255 | 1.33e-24 | 100.0 | |
| Socaptg000381l_1g00398 | . | 58 | 377 | GA20OX gene family | AT5G07200 | 30.838 | 5.06e-40 | 143.0 | |
| Socaptg000381l_1g00397 | . | 201 | 366 | GA20OX gene family | AT1G44090 | 34.659 | 5.63e-32 | 117.0 | |
| Soca5g00550 | . | 79 | 357 | GA20OX gene family | AT4G25420 | 26.224 | 5.87e-21 | 90.1 | |
| Soca5g00431 | . | 25 | 374 | GA20OX gene family | AT5G51810 | 62.011 | 7.02e-165 | 464.0 | |
| Soca5g00614 | . | 37 | 354 | GA20OX gene family | AT4G25420 | 29.969 | 4.07e-41 | 146.0 | |
| Soca5g00906 | . | 40 | 372 | GA20OX gene family | AT4G25420 | 30.612 | 1.45e-49 | 168.0 | |
| Soca7g02009 | . | 35 | 356 | GA20OX gene family | AT4G25420 | 32.822 | 4.91e-54 | 180.0 | |
| Soca6g03675 | . | 31 | 310 | GA20OX gene family | AT1G60980 | 20.521 | 1.21e-06 | 48.1 | |
| Soca6g03763 | . | 36 | 357 | GA20OX gene family | AT5G51810 | 31.818 | 4.69e-47 | 162.0 | |
| Soca7g01498 | . | 24 | 379 | GA20OX gene family | AT5G07200 | 46.927 | 2.92e-121 | 353.0 | |
| Soca7g01499 | . | 304 | 378 | GA20OX gene family | AT5G51810 | 45.333 | 1.91e-20 | 80.9 | |
| Soca5g05956 | . | 36 | 357 | GA20OX gene family | AT1G60980 | 29.722 | 9.17e-44 | 154.0 | |
| Soca5g05959 | . | 29 | 357 | GA20OX gene family | AT1G60980 | 30.117 | 2.11e-42 | 149.0 | |
| Soca9g00851 | . | 59 | 341 | GA20OX gene family | AT5G51810 | 32.99 | 1.56e-44 | 155.0 | |
| Soca5g03161 | . | 62 | 150 | GA20OX gene family | AT4G25420 | 30.769 | 1.93e-08 | 50.4 | |
| Soca9g03122 | . | 189 | 335 | GA20OX gene family | AT5G07200 | 31.081 | 5.96e-22 | 89.4 | |
| Soca9g02894 | . | 39 | 353 | GA20OX gene family | AT4G25420 | 30.581 | 6.73e-34 | 127.0 | |
| Soca7g02705 | . | 40 | 369 | GA20OX gene family | AT5G51810 | 32.047 | 1.21e-56 | 186.0 | |
| Soca5g02730 | . | 63 | 366 | GA20OX gene family | AT1G44090 | 30.892 | 2.92e-39 | 140.0 | |
| Soca6g00820 | . | 42 | 285 | GA20OX gene family | AT5G51810 | 35.2 | 4.03e-38 | 135.0 | |
| Soca6g00821 | . | 32 | 352 | GA20OX gene family | AT4G25420 | 29.586 | 4.91e-44 | 153.0 | |
| Soca6g00823 | . | 42 | 285 | GA20OX gene family | AT5G51810 | 36.032 | 1.78e-38 | 137.0 | |
| Soca6g00822 | . | 42 | 355 | GA20OX gene family | AT5G51810 | 35.331 | 2.94e-52 | 175.0 | |
| Soca6g00824 | . | 42 | 350 | GA20OX gene family | AT5G51810 | 32.381 | 5.52e-43 | 150.0 | |
| Soca9g02769 | . | 10 | 373 | GA20OX gene family | AT4G25420 | 61.58 | 9.75e-164 | 461.0 | |
| Socaptg000718l_1g00397 | . | 61 | 330 | GA20OX gene family | AT4G25420 | 31.419 | 1.27e-26 | 106.0 | |
| Socaptg000718l_1g00398 | . | 61 | 267 | GA20OX gene family | AT4G25420 | 30.172 | 9.97e-14 | 68.2 | |
| Socaptg000718l_1g00399 | . | 61 | 267 | GA20OX gene family | AT4G25420 | 30.172 | 9.97e-14 | 68.2 | |
| Soca1g02211 | . | 37 | 368 | GA20OX gene family | AT4G25420 | 31.395 | 2.03e-52 | 176.0 | |
| Soca9g00266 | ACH | 58 | 355 | GA20OX gene family | AT4G25420 | 24.834 | 4.19e-17 | 79.3 | |
| Soca9g00267 | ACH | 232 | 355 | GA20OX gene family | AT4G25420 | 30.469 | 1.63e-09 | 53.5 | |
| Soca9g00264 | . | 54 | 352 | GA20OX gene family | AT5G51810 | 25.333 | 4.79e-22 | 93.6 | |
| Soca9g00263 | ACH | 55 | 358 | GA20OX gene family | AT5G07200 | 25.641 | 1.17e-20 | 89.7 | |
| Soca9g00262 | . | 57 | 364 | GA20OX gene family | AT1G60980 | 34.824 | 4.07e-50 | 170.0 | |
| Soca9g00265 | ACH | 55 | 335 | GA20OX gene family | AT5G07200 | 26.644 | 8.31e-22 | 92.8 | |
| Soca9g00236 | ACH | 53 | 355 | GA20OX gene family | AT5G07200 | 27.961 | 5.24e-24 | 99.0 | |
| Soca9g00269 | ACH | 56 | 369 | GA20OX gene family | AT4G25420 | 25.786 | 8.65e-18 | 81.3 | |
| Soca2g04293 | . | 188 | 351 | GA20OX gene family | AT1G60980 | 31.609 | 1.36e-29 | 110.0 | |
| Soca2g04294 | . | 187 | 287 | GA20OX gene family | AT5G07200 | 33.333 | 5.89e-16 | 70.1 | |
| Soca5g00354 | . | 59 | 356 | GA20OX gene family | AT4G25420 | 32.68 | 1.07e-37 | 136.0 | |
| Soca1g02248 | . | 37 | 368 | GA20OX gene family | AT4G25420 | 31.395 | 1.96e-52 | 176.0 | |
| Soca1g02322 | . | 5 | 364 | GA20OX gene family | AT4G25420 | 29.534 | 1.18e-50 | 172.0 | |
| Soca1g02321 | . | 5 | 364 | GA20OX gene family | AT4G25420 | 29.534 | 1.18e-50 | 172.0 |