AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02524 ATGGGGAATAAGTTGGGAAGAAGAAGACAATTAGTTGATGAAAAGTATACAAGGCCACAAGGATTGTATCAACATAAAGATGTAGATCATAAGAAGCTTAGAAAGCTTATACTTGATTCTAAACTTGCTCCTTGTTATCCTGGTGATGATGATTGTAGTTGTGATCTTGAAGAATGCCCTATTTGTTTCTTGTATTATCCAAGTCTAAATAGATCAAGATGTTGCATGAAAGGCATTTGTACCGAGTGTTTCTTGCAAATGAAGACACCTAATTCAACGCGCCCCACACAATGTCCATTTTGTAAAACATTGAACTACGCTGTGGAGTATAGAGGCGTGAAGAGCAAAGAGGAAAAGGGGCAGGAACAAATTGAAGAACAAAGGGTGATAGAAGCCAAAATAAGAATGAGACAACAGGAAATTCTAGATGAAGAGGAAAGAATGCTAAAAAGGCAAGATATGAGTTCCTCAAGCAGGATAAACGAACCAAGTGAAGCTGAATATTTCTCCCGGGCAGCGACATCTTCTTCTGAAGGTGAGGAAATCATTTCTGCCCCACATTCAGTTGGTGCAACAATTAGATATCCTCAAAGTTCTAGGGAGAACAGAGAAGATGAGTTTGACCTTGATCCCGAAAACATAATGCTCATGGAAGCTATCTGGTTGTCGTATCAGGAGGATAACAAGCATCAACACCATAATCCCAACTATGGCGATGCTGCCCAATTAGCAAAATACGCAACTGAAGTTCGTGTTTTAGCGTCTATGGCTCCACAAGCCGAATCATCAGCTTCATCATCATCACCTTCTGGTGGTCTTGCATGTGCCATAGCTGCTCTGGCTGAACGGCAGCAAATGGGAGGAGAATCATCAACCAATTACAGCAACTATGGTGGGAATATGTCAACGTATAACGTGCATCCAGACCATAGCTCAACAAGGTTATCACTTGATAGCCATCTGCAAATAGATCATGATGGTTCAGAGGAATTGACTGAACCAGTCTACAGGTATGATAATTCAAGTGCAGTAGATGATGTAAGCAGGGGACAATGTGGTCAGCGGGACGAGATGGAGAATAGTTATGGTGGGGGAAGTATAGTTGTTCCTGAGAGTTTTGAAGAGCAGATGATGCTAGCCATGGCAGTTTCGCTGGCAGAGGCTCGAGCGAGGACTAGCACACCAGAAGTTGCTTGGATTTAG 1203 42.31 MGNKLGRRRQLVDEKYTRPQGLYQHKDVDHKKLRKLILDSKLAPCYPGDDDCSCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKSKEEKGQEQIEEQRVIEAKIRMRQQEILDEEERMLKRQDMSSSSRINEPSEAEYFSRAATSSSEGEEIISAPHSVGATIRYPQSSRENREDEFDLDPENIMLMEAIWLSYQEDNKHQHHNPNYGDAAQLAKYATEVRVLASMAPQAESSASSSSPSGGLACAIAALAERQQMGGESSTNYSNYGGNMSTYNVHPDHSSTRLSLDSHLQIDHDGSEELTEPVYRYDNSSAVDDVSRGQCGQRDEMENSYGGGSIVVPESFEEQMMLAMAVSLAEARARTSTPEVAWI 400
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02524 400 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Soca5g02524 400 PANTHER PROTEIN SIP5 1 320 IPR039301 GO:0005737(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02524 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
157097 Soca5g02524 Soca9g01293
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:27357114 Soca9g01294 Soca-Chr9:14581193 dispersed
Soca Soca-Chr5:27357114 Soca5g02735 Soca-Chr5:30178559 wgd
Soca Soca-Chr5:27357114 Soca9g01293 Soca-Chr9:14581193 wgd