AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02530 ATGGCATTGGATGCCATTGAAGATGGCATTAAAGATAAAGAAAGATTACACCCTTTACCGAAAACAGCCGACCCAGAAGTTCAGATCGCCGGAAATTTTGCTCCGGTGCCGGAACAGCCCGTAAGAAAATCTTTACCCGTGGCCGGAAAAATCCCGGAACATATACAAGGTGTTTATTTACGAAACGGTGCCAACCCATTATTTGAACCGACTTCGGGCCATCATTTGTTTGATGGAGACGGCATGATTTATGCCGTGAAGTTGGAAAATGGGTCTGCAAGTTATGCTTGCCGATTTACTGAAACCCAACGGCTTGTTCAGGAACGAGCCATTGGGAAACCAGTATTCCCCAAAGCAATTGGGGAATTACATGGGCATTCCGGGATAGCGAAATTGCTATTGTTTTATGCTCGTGGGTTGTGCGGGATCATTGATCATACTAAAGGCATTGGTGTCGCCAACGCCGGTTTGGTTTATTTTAATAACCGATTGTTGGCGATGTCTGAAGATGATTTGCCTTATCATGTTCGTGTTACACCTTCTGGCGATTTGAAAACCGCGGGAAGGTATAACTTTGATGGTCAACTTGAGTCAACCATGATTGCTCACCCCAAACTGGACCCAGTTACGGGTGAGATGTTTGCACTCAGCTACGATGTTATTCAAAAACCGTACTTGAAGTACTTCCGGTTTTCACCGGATGGCAAGAAATCAAATGATGTTGCTATTGATTTGGGAAAGCCTACGATGGTACATGATTTCGCAATCACGGAGAATTTTGTAGTTGTGCCGGATCATCAAGTTGTTTTCAAGATGTCCGAAATGATCACCGGCGGGTCGCCCGTGGTGTACGATAAAGAGAAAGTATCGCGGTTTGGTGTACTTGATAAATATGCGGAAGATGGGTCGGGAATTAAATGGGTTGAAGTTCCAGATTGTTTTTGTTTTCATTTATGGAATGCGTGGGAAGAACCCGAACACGACGAGGTTGTCGTGATCGGTTCTTGCATGACTCCTGCGGATTCCATTTTTAATGAATGCAACGAGGAGTTGAAATCCGTTTTATCAGAAATTCGTTTGAATTTAAAAACAGGGAAATCGACACGTAAGGCAATAATTGCGCCCGAAAACGACGTTAACTTGGAAGCAGGAATGGTTAACAAAAACCTCTTGGGCCGCAAGTCGCAGTTTGCATATCTTGCAATAGCCGAGCCTTGGCCAAAGGTGTCTGGTTTCGCCAAAGTTGATCTTTCAACTGGCGAAATCAAAAAGTTCATTTACGGGGAAGAAAAATACGGTGGGGAACCACTTTTTCTTCCCCGAGAATCCAACTCTGACAGAGAAGACGACGGCCACATTTTAGCCTACGTCCACGACGAAAAAACATGGGAATCAGAACTTCAAATCGTGAATGCAATGACAATGGAATTAGAAGCGACGGTCAAGTTACCATCCCGGGTTCCATACGGCTTTCACGGAACGTTTATTAGTGCCAAAGATTTGGCAACTCAGTCTTAG 1518 44.47 MALDAIEDGIKDKERLHPLPKTADPEVQIAGNFAPVPEQPVRKSLPVAGKIPEHIQGVYLRNGANPLFEPTSGHHLFDGDGMIYAVKLENGSASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGLCGIIDHTKGIGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTAGRYNFDGQLESTMIAHPKLDPVTGEMFALSYDVIQKPYLKYFRFSPDGKKSNDVAIDLGKPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLDKYAEDGSGIKWVEVPDCFCFHLWNAWEEPEHDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRKAIIAPENDVNLEAGMVNKNLLGRKSQFAYLAIAEPWPKVSGFAKVDLSTGEIKKFIYGEEKYGGEPLFLPRESNSDREDDGHILAYVHDEKTWESELQIVNAMTMELEATVKLPSRVPYGFHGTFISAKDLATQS 505
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02530 505 MobiDBLite consensus disorder prediction 1 21 - -
Soca5g02530 505 PANTHER BETA-CAROTENE DIOXYGENASE 20 496 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
Soca5g02530 505 Pfam Retinal pigment epithelial membrane protein 33 497 IPR004294 GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02530 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Event-related genes

Select Gene_1 Gene_2 Event_name
157099 Soca5g02530 Soca9g01285
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:27488654 Soca9g02589 Soca-Chr9:29337587 dispersed
Soca Soca-Chr5:27488654 Soca5g02740 Soca-Chr5:30298286 wgd
Soca Soca-Chr5:27488654 Soca9g01285 Soca-Chr9:14487897 wgd