Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02535	ATGGAGGTAACGAATGTGACCGAGTACCAGGCAATTGCCAAGGAGAAGTTGCCAAAGATGGCCTATGACTACTATGCATCTGGTGCCGAGGACCAATGGACTCTAGAAGAGAACAGAAATGCTTTTGCAAGAATTCTGTTTAGGCCCCGTATTCTTATTGATGTGAGCAAGATAGACATGACCACAACCATTTTGGGATTCAAATTATCTATGCCCATAATGATCGCCCCAACGGCTTTTCAAAAGATGGCTCACCCTGAAGGCGAATATGCAACAGCTAGAGCTGCATCTGCAGCTGGAACTATTATGACACTGTCATCATGGGCAACATCAAGCGTTGAGGAGGTTGCATCGACAGGACCTGGGATCCGCTTCTTCCAGCTTTATGTGTACAAGGACCGCAACGTTGTGGCTCAACTTGTGAGAAGAGCTGAACGAGCCGGGTTCAAAGCCATAGCTCTAACAGTTGACACACCGATACTAGGACGTCGAGAAGCTGACATCAAAAACAGGTTTACTTTACCCCCATTTTTGACACTGAAGAACTTTGAGGGTCTGAACCTTGGCAAGATGGACGAAGCTAATGACTCTGGATTAGCTTCTTATGTTGCTGGTCAGATTGACCGCACTTTGAGCTGGAAGGATGTGCAGTGGCTTCAAACAATCACTACAATGCCAATCCTTGTGAAGGGGGTGATCACTGCCGAGGATACAAGGTTAGCTATTCAAGCTGGAGCTGCGGGAATTATTGTATCCAATCATGGAGCTCGTCAACTTGACTATGTGCCCGCCACTATCATGGCTTTAGAGGAGGTTGTGAAAGCTGCTCAAGGCCGTGTACCTGTATTCTTGGATGGTGGTGTCCGACGTGGTACAGATGTTTTCAAGGCACTGGCACTTGGAGCTTCCGGCATATTTATTGGGCGACCCGTGGTCTTTTCGTTGGCTGCTGAAGGGGAAGCTGGAGTGAAAAAAGTGCTTCAAATGTTACATGATGAGTTTGAGCTAACCATGGCATTAAGCGGTTGTACCTCACTAAAACAAATTACCCGCAACCACATTGTAACTGAGTGGGATGCTCCACGGGCTCGTCCTGCACCCAGGTTATAG	1110	47.48	MEVTNVTEYQAIAKEKLPKMAYDYYASGAEDQWTLEENRNAFARILFRPRILIDVSKIDMTTTILGFKLSMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPILGRREADIKNRFTLPPFLTLKNFEGLNLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITTMPILVKGVITAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVKKVLQMLHDEFELTMALSGCTSLKQITRNHIVTEWDAPRARPAPRL	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02535	369	ProSiteProfiles	FMN-dependent alpha-hydroxy acid dehydrogenase domain profile.	1	359	IPR037396	-
	Soca5g02535	369	Pfam	FMN-dependent dehydrogenase	13	355	IPR000262	GO:0016491(InterPro)
	Soca5g02535	369	FunFam	peroxisomal (S)-2-hydroxy-acid oxidase GLO1	1	366	-	-
	Soca5g02535	369	SUPERFAMILY	FMN-linked oxidoreductases	2	356	-	-
	Soca5g02535	369	CDD	alpha-hydroxyacid-oxid-FMN	8	351	IPR012133	GO:0010181(InterPro)\|GO:0016491(InterPro)
	Soca5g02535	369	ProSitePatterns	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	252	258	IPR008259	GO:0016491(InterPro)
	Soca5g02535	369	Gene3D	Aldolase class I	1	369	IPR013785	-
	Soca5g02535	369	PANTHER	S -2-HYDROXY-ACID OXIDASE-RELATED	2	353	-	GO:0005777(PANTHER)\|GO:0008891(PANTHER)
	Soca5g02535	369	PIRSF	Al-hdrx-acd-dh	1	358	IPR012133	GO:0010181(InterPro)\|GO:0016491(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02535	K11517	(S)-2-hydroxy-acid oxidase [EC:1.1.3.15]
	Soca5g02535	K00101	L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	157100	Soca5g02535	Soca9g01284

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:27612003	Soca9g02487	Soca-Chr9:28085588	dispersed
	Soca	Soca-Chr5:27612003	Soca9g01284	Soca-Chr9:14436168	wgd