AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02540 ATGAAAAATAAGAGGTGGTTTGGAGGTGTGATCGCAATTTTAATTGCAATATATTTTAATCCTTTGTTACGTTGGTATTCTCTCAATATTTATAAAACCACCTCCCACCTCTGCACTTCTCAGGATGCTTGTGAATATACAGGGATTTTTGAGGAATGCTGTTGTGATTATAAGAGCGTTGATGATGTTAATAAAGCAGTTTTACATCCCTTGTTGCAGAAGCTTGTTAAGACTCCCTTCTTCCGGTATTTCAAGGTTAAGTTATGGTGTGATTGCCCCTTTTGGCCTGACGATGGTATGTGCCGCCTACGTGACTGCAGTGTATGTGAGTGTCCAGATCATGAGTTCCCAGAATCGTTTAAGAATCCATCGCTGCATATTCTTCCAAGAGATGACCCCATATGTCAAGAGGGAAAGCCAGAGGCTACCGTTGATCGAACGATAGATGCTAAGTCGTTTAGAGGCTGGGTAGAAATAGATAATCCATGGACTCATGATGATGAAACTGATAATGGTGAAATGACATATGTGAATCTGCAACTGAACATCGAACGTTACACAGGTTACACGGGGCCATCAGCAAGAAGAATATGGGATGCTATATATTCAGAAAATTGTCCAAGATATGCATATGGAGAGGTTTGCCCGGAGAAGAAAGTATTATTCAAGTTAATCTCTGGTTTGCACTCCTCAATTTCAACCCACATAGCTGCTGATTATTTACTTGATGAGACCACCTATCAGTGGGGTCCAAATCTTGAATTGATGCATGACCGTGTCTTGAAACATCATGATCGCGTGGAAAACTTGTACTTCACTTTCCTATTTGTACTCAGAGCCGTGACGAAGGCAGCTGCTTACTTGGATCAGGCAGAGTACGACTCTGGTAACCATGTGGAGGATTTGAAAGCCCAATCCTTGATTCAACAACTGGTTCATGATTCCAAACTGCAAGCTGCATGTGCTCTTCCATTTGATGAGGCTGAACTGTGGCAAGGCCAAGGTGGACCCATACTCAGGCAGCAGATCCAGAATCAATTTCGAAACATCAGTGCACTCATGGACTGTGTAGGGTGTGAGAAGTGTCGTCTTTGGGGAAAACTTCAGGTTCTCGGCCTTGGGACTGCATTAAAAATTCTTTTTTCTGTCGATAGTCAGGGAAACCCAAACACACATTTGCAATTACAAAGAAATGAAGTGATCGCTTTAATTAATCTGCTAAATCAGTTATCAGAATCTGTTAAATTTGTTACTAAAACGAGAGATAAGGTTGCTTTAGAGCTTCCTGCTAAAGAAATCAGGTTCATTCACAAGCAATGGGGATTATTAATAGCTCACTGGTGGAAGGACCTGTCAAAATCCAACTGA 1368 41.52 MKNKRWFGGVIAILIAIYFNPLLRWYSLNIYKTTSHLCTSQDACEYTGIFEECCCDYKSVDDVNKAVLHPLLQKLVKTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPDHEFPESFKNPSLHILPRDDPICQEGKPEATVDRTIDAKSFRGWVEIDNPWTHDDETDNGEMTYVNLQLNIERYTGYTGPSARRIWDAIYSENCPRYAYGEVCPEKKVLFKLISGLHSSISTHIAADYLLDETTYQWGPNLELMHDRVLKHHDRVENLYFTFLFVLRAVTKAAAYLDQAEYDSGNHVEDLKAQSLIQQLVHDSKLQAACALPFDEAELWQGQGGPILRQQIQNQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVDSQGNPNTHLQLQRNEVIALINLLNQLSESVKFVTKTRDKVALELPAKEIRFIHKQWGLLIAHWWKDLSKSN 455
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02540 455 PANTHER ERO1-RELATED 34 423 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(InterPro)|GO:0015035(PANTHER)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0034975(PANTHER)|GO:0071949(InterPro)
Soca5g02540 455 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 68 416 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Soca5g02540 455 PIRSF ERO 9 452 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Soca5g02540 455 SUPERFAMILY ERO1-like 55 422 IPR037192 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02540 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:27673643 Soca5g02748 Soca-Chr5:30458442 wgd