AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Soca5g02544 | ATGATACATCGATTTTTAAAAAACTTCTGTTTAACCGGCGTGCTACTGGGCCGTCGGCATATGAGCAACACGGCCACCGTGATGAGCTTCGGTGACGGTAGCCACGGTGCACTTGGGTTGCCAACATTGGTGGCCGGAATGGGTTCCGATGCATATGATCCAACGCCCATTTCTGCCTTACCTTCTGATGTTTGTAGCATAGCTGCTGGTCATTATCACTCGCTTGCTGTTACTTGTGAAGGACAAGTATGGTCTTGGGGCCGAAATCTCGAATACCAACTTGGCCGTTCCTTTGATTCTCCTAGAGAAACATGGTTGGAACCACAAAGATTAAATGGGTTGAGTGGTATAAAGTCTGCATATGCATCAGGAGTTGTATCTGCAGCTATTGATGTAGATGGGTGTTTATGGATTTGGGGGAAATCGAAGCGCGGTCAGTTGGGCCTTGGAAACGGTATCACAGAGGCTGTTCTTCCCAAAAGGATAAAAGTTCTTGATAAAGAAGAGATAATTAAGGTTGCATTTGGATGGGGGCATGCTCTTGCACTTACTAAAGATGGAAAGTTATTTGGTTGGGGCTATTCAGCAGATGGTAGATTAGGAAAGAGAGGAGTCATGGTGGCTTCACCACTCGAATCAAGTGCGAATTTATCTTCCAGTTTGAAGCTTGAAGATGCTGAGAAACTAGTCTTGGAAGCTATGGATAAGGAAAATGATATGCCTATTATTTGGGAGCCATGTTTGATTGATGAGCTAAATGGTGTTGAAGTTGCAGATGTGTCTTGTGGGCTTGACCACACCATGGTTCTTTTACGTGATGGAACCTTACTCAGTGGTGGGAGCAATGTATATGGGCAATTGGGTAGAGAAACACAAGATCTAGAGTTGCTTCCAGTTGATATAAGTGCCCACCCGGTTTCTATTGCTTCAGGGCTGGGCCATTCTTTGGCTGTATGCCAGATTGCATCTGCAGAGGGCGGTGGAGTCATCTCCGGTATCTTTTCATGGGGGTGGGGTCAGAATTCTCAGCTGGGGAGGGAAGGTCCAACGAACATCCCATTGCTCGTAGATGGACTTTTAGGTCAAAACCCATTGTCAGTGTCAGGCGGACGGGTCCACTCCATTGCTTTAACTTCTGACGGAGAGGTCTTTTCTTGGGGTTGTGGTAGAAATGGGAGGCTCGGGTTGGGCAGTTCTGTGGATGAGCCAGAACCCATGTTGGTCGAGTTTCCAGAAGATACTAAAGTTTTGCAAATTGCCTCGGGCTTTGATCATAATCTGGTTCTAACTGGCAACTAA | 1299 | 46.42 | MIHRFLKNFCLTGVLLGRRHMSNTATVMSFGDGSHGALGLPTLVAGMGSDAYDPTPISALPSDVCSIAAGHYHSLAVTCEGQVWSWGRNLEYQLGRSFDSPRETWLEPQRLNGLSGIKSAYASGVVSAAIDVDGCLWIWGKSKRGQLGLGNGITEAVLPKRIKVLDKEEIIKVAFGWGHALALTKDGKLFGWGYSADGRLGKRGVMVASPLESSANLSSSLKLEDAEKLVLEAMDKENDMPIIWEPCLIDELNGVEVADVSCGLDHTMVLLRDGTLLSGGSNVYGQLGRETQDLELLPVDISAHPVSIASGLGHSLAVCQIASAEGGGVISGIFSWGWGQNSQLGREGPTNIPLLVDGLLGQNPLSVSGGRVHSIALTSDGEVFSWGCGRNGRLGLGSSVDEPEPMLVEFPEDTKVLQIASGFDHNLVLTGN | 432 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Soca5g02544 | 432 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 274 | 321 | IPR000408 | - | |
| Soca5g02544 | 432 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 331 | 380 | IPR000408 | - | |
| Soca5g02544 | 432 | SUPERFAMILY | RCC1-BLIP-II | 24 | 319 | IPR009091 | - | |
| Soca5g02544 | 432 | SUPERFAMILY | RCC1-BLIP-II | 333 | 431 | IPR009091 | - | |
| Soca5g02544 | 432 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 134 | 186 | IPR000408 | - | |
| Soca5g02544 | 432 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 381 | 432 | IPR000408 | - | |
| Soca5g02544 | 432 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 187 | 273 | IPR000408 | - | |
| Soca5g02544 | 432 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 25 | 116 | IPR051210 | - | |
| Soca5g02544 | 432 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 333 | 377 | IPR000408 | - | |
| Soca5g02544 | 432 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 380 | 429 | IPR000408 | - | |
| Soca5g02544 | 432 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 133 | 183 | IPR000408 | - | |
| Soca5g02544 | 432 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 81 | 133 | IPR000408 | - | |
| Soca5g02544 | 432 | Gene3D | - | 220 | 432 | IPR009091 | - | |
| Soca5g02544 | 432 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 257 | 286 | - | - | |
| Soca5g02544 | 432 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 64 | 93 | - | - | |
| Soca5g02544 | 432 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 25 | 80 | IPR000408 | - | |
| Soca5g02544 | 432 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 67 | 77 | IPR000408 | - | |
| Soca5g02544 | 432 | PRINTS | Chromosome condensation regulator RCC1 signature | 376 | 397 | IPR000408 | - | |
| Soca5g02544 | 432 | PRINTS | Chromosome condensation regulator RCC1 signature | 83 | 99 | IPR000408 | - | |
| Soca5g02544 | 432 | PRINTS | Chromosome condensation regulator RCC1 signature | 26 | 42 | IPR000408 | - | |
| Soca5g02544 | 432 | PRINTS | Chromosome condensation regulator RCC1 signature | 173 | 189 | IPR000408 | - | |
| Soca5g02544 | 432 | PRINTS | Chromosome condensation regulator RCC1 signature | 134 | 150 | IPR000408 | - | |
| Soca5g02544 | 432 | PRINTS | Chromosome condensation regulator RCC1 signature | 64 | 77 | IPR000408 | - | |
| Soca5g02544 | 432 | PRINTS | Chromosome condensation regulator RCC1 signature | 189 | 203 | IPR000408 | - | |
| Soca5g02544 | 432 | Gene3D | - | 11 | 219 | IPR009091 | - | |
| Soca5g02544 | 432 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 260 | 270 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Soca5g02544 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Soca | Soca-Chr5:27712800 | Soca5g02754 | Soca-Chr5:30509878 | dispersed | |
| Soca | Soca-Chr5:27712800 | Soca5g02753 | Soca-Chr5:30509878 | wgd |