Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02548	ATGGCGTCTATCGTCGGACCATCTCATTTCTTCTCGTCTTCCGGCATTGTCACCGCCCGTCCATCCTCTTCATCCTGCCGGACCTTATCATTTTCATCTTCTTCTACTCTCTCCGGTGACAAAATATCATCATCACCATCATCATCCGTACAACGACGTCGTTTTGCAAGTAGAAGTTCCGTGATTGTTTCTCCTAAAGCTGTTTCTGATTCTCAAAATTCGCAGACATGCCTTGATCCTGACGCTAGTCAAAGTGTGTTGGGGATAATACTTGGAGGTGGAGCTGGTACACGGCTTTATCCTTTGACAAAGAAGAGGGCAAAACCTGCTGTTCCTTTGGGAGCAAACTACAGGCTTATTGATATTCCTGTCAGCAACTGCTTGAACAGCAACATTTCAAAGATTTATGTTCTTACACAGTTCAACTCTGCGTCACTCAATCGCCACCTTTCACGGGCTTATGCAAGCAACATGGGTGGTTACAAAAACGAAGGGTTTGTTGAAGTCCTTGCTGCTCAACAGAGTCCCGAGAATCCAAATTGGTTTCAGGGTACTGCTGATGCTGTAAGACAATATTTGTGGCTATTTGAAGAGCATAATGTTCTGGAGTATCTAATCCTTGCTGGAGATCATTTGTATCGTATGGATTATGAGAAATTTATTCAAGCACACAGAGAAACTGATGCTGATATCACTGTAGCAGCTCTGCCAATGGATGAAAAACGTGCCACTGCTTTTGGTCTGATGAAGATTGATGAAGAAGGGCGTATAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAACTGAAAGCTATGAAAGTCGATACTACAATATTAGGACTTGATGAAGAGAGAGCTAAAGAGATGCCGTATATTGCTAGTATGGGTATATATGTTGTCAGCAAAGATGTAATGTTGAATTTGCTGCGAGATAAGTTCCCTGGAGCAAATGATTTTGGAAGTGAAGTAATTCCTGGAGCAACTTCTATTGGGCTAAGAGTACAAGCTTATCTTTATGATGGCTACTGGGAAGATATTGGTACCATTGAGGCTTTCTATAACGCCAATTTGGGAATCACAAAAAAGCCTGTGCCAGATTTCAGCTTCTATGACCGTTCGTCCCCCATTTACACCCAACCGCGATACTTGCCTCCTTCCAAGATGCTTGATGCTGATGTCACTGATAGTGTTATTGGTGAAGGGTGTGTGATTAAGAACTGCAAAATTCACCATTCTGTTGTGGGACTTAGATCTTGCATAGCTGAAGGTGCAGTCATTGAAGATTCGCTGCTGATGGGAGCAGATTATTATGAGACTGATGCTGACAGGGAGCTTCATGCTGCAAAAGGCAGTGTTCCAATTGGTATTGGAAAAAACACTCATATCAAAAGAGCAATCATTGACAAAAATGCACGCATAGGAGACAACGTGAAGATTATAAACAGTGATAATATTCAAGAAGCAGCAAGGGAAACAGAAGGGTACTTCATAAAAAGTGGAATCGTGACAGTTATCAAAGACGCATTGATTCCTTCCGGCAGTGTAATCTAG	1551	42.17	MASIVGPSHFFSSSGIVTARPSSSSCRTLSFSSSSTLSGDKISSSPSSSVQRRRFASRSSVIVSPKAVSDSQNSQTCLDPDASQSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDEERAKEMPYIASMGIYVVSKDVMLNLLRDKFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIAEGAVIEDSLLMGADYYETDADRELHAAKGSVPIGIGKNTHIKRAIIDKNARIGDNVKIINSDNIQEAARETEGYFIKSGIVTVIKDALIPSGSVI	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02548	516	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	85	477	IPR029044	-
	Soca5g02548	516	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	92	111	IPR005836	GO:0005978(InterPro)\|GO:0008878(InterPro)
	Soca5g02548	516	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	66	381	IPR029044	-
	Soca5g02548	516	MobiDBLite	consensus disorder prediction	31	53	-	-
	Soca5g02548	516	FunFam	Glucose-1-phosphate adenylyltransferase	382	516	-	-
	Soca5g02548	516	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	293	303	IPR005836	GO:0005978(InterPro)\|GO:0008878(InterPro)
	Soca5g02548	516	Pfam	Nucleotidyl transferase	88	361	IPR005835	GO:0009058(InterPro)
	Soca5g02548	516	SUPERFAMILY	Trimeric LpxA-like enzymes	379	516	IPR011004	-
	Soca5g02548	516	Gene3D	Hexapeptide repeat proteins	382	516	-	-
	Soca5g02548	516	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	181	189	IPR005836	GO:0005978(InterPro)\|GO:0008878(InterPro)
	Soca5g02548	516	NCBIfam	glucose-1-phosphate adenylyltransferase	86	480	IPR011831	GO:0005978(InterPro)\|GO:0008878(InterPro)
	Soca5g02548	516	CDD	LbH-G1P-AT-C	384	510	-	-
	Soca5g02548	516	CDD	ADP-Glucose-PP	97	346	-	-
	Soca5g02548	516	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	44	516	IPR011831	GO:0005978(InterPro)\|GO:0008878(InterPro)
	Soca5g02548	516	FunFam	Glucose-1-phosphate adenylyltransferase	67	381	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02548	K00975	glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr2:80738205	Soca5g02548	Soca-Chr5:27869507	dispersed
	Soca	Soca-Chr4:5054895	Soca5g02548	Soca-Chr5:27869507	dispersed
	Soca	Soca-Chr4:14847618	Soca5g02548	Soca-Chr5:27869507	dispersed
	Soca	Soca-Chr4:53789910	Soca5g02548	Soca-Chr5:27869507	dispersed
	Soca	Soca-Chr5:27869507	Soca5g02763	Soca-Chr5:30661452	wgd