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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02552 ATGGCAAAGCAAAAGATTGTAGTGAAGGTGACCATGAACTGCGAGAAGAAATCTCGCAAGGCTTTGAAGATTGCGGTTAGTCTTTATGGAGTGGAGTCAGCGTCGCTAGTTGGATCAGATAAAGACTCAATAGAGGTGATTGGTGAAGGAACCGACCCGGTTGAACTAACGAAGTTGCTAAGGAAAGGTGTAGGATGCACTCAACTAGTTAGTGTTGGTCCAGTCGAAGAGAAGAAACCCAAAGTTGAGGAAACGAAGCCCACGATTGTGCCTCTGCAAATTAATCCTTACCAGTACTGCTATAATGGTTATGGGATGCCCTACTACTATTGTTATGAAATATAA 345 43.19 MAKQKIVVKVTMNCEKKSRKALKIAVSLYGVESASLVGSDKDSIEVIGEGTDPVELTKLLRKGVGCTQLVSVGPVEEKKPKVEETKPTIVPLQINPYQYCYNGYGMPYYYCYEI 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02552 114 Gene3D - 1 78 - -
Soca5g02552 114 PANTHER OS04G0464100 PROTEIN 4 86 IPR044296 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02552 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:27920637 Soca5g02767 Soca-Chr5:30696438 dispersed
Soca Soca-Chr5:27907481 Soca5g02552 Soca-Chr5:27920637 tandem
Soca Soca-Chr5:27920637 Soca5g02553 Soca-Chr5:27939230 tandem